Algorithm to detect germline and de novo transposon insertions
☆34Aug 14, 2025Updated 7 months ago
Alternatives and similar repositories for TEMP2
Users that are interested in TEMP2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆124Mar 10, 2026Updated 2 weeks ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆64Jun 22, 2025Updated 9 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- Find and characterise transposable element insertions☆20May 26, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105May 31, 2025Updated 9 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Jan 26, 2026Updated 2 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 9 months ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Jul 7, 2025Updated 8 months ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Drosophila transposable element canonical sequences☆29Jul 11, 2022Updated 3 years ago
- ☆11May 12, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Yet Another Chimeric Read Detector☆85Nov 7, 2024Updated last year
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12Sep 18, 2025Updated 6 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- MEGAnE☆33Sep 13, 2023Updated 2 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Apr 20, 2024Updated last year
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆92Jan 26, 2023Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- A pipeline creation tool using Snakemake☆13Mar 5, 2026Updated 2 weeks ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- Streamlining SLAM-seq analysis with ultra-high sensitivity☆48May 22, 2024Updated last year
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Bioinformatics Algorithms implemented in Rust for Learners☆31Aug 1, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- panISa is a software to search insertion sequence (IS) on resequencing data (bam file)☆24Apr 11, 2024Updated last year
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 2 years ago
- ☆16May 23, 2022Updated 3 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago