Algorithm to detect germline and de novo transposon insertions
☆31Aug 14, 2025Updated 6 months ago
Alternatives and similar repositories for TEMP2
Users that are interested in TEMP2 are comparing it to the libraries listed below
Sorting:
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆121Jul 4, 2025Updated 8 months ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104May 31, 2025Updated 9 months ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 9 months ago
- Find and characterise transposable element insertions☆20May 26, 2023Updated 2 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Yet Another Chimeric Read Detector☆85Nov 7, 2024Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Jul 7, 2025Updated 7 months ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- Drosophila transposable element canonical sequences☆29Jul 11, 2022Updated 3 years ago
- ☆11May 12, 2021Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- A pipeline creation tool using Snakemake☆12Feb 20, 2026Updated last week
- Shell bootloader for data science.☆12Feb 25, 2026Updated last week
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Jan 14, 2025Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- ☆10Mar 4, 2025Updated last year
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12Sep 18, 2025Updated 5 months ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- HiFi-based caller for highly similar paralogous genes☆61Updated this week
- ☆27Feb 19, 2025Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Analysis of antibody NGS data☆13May 17, 2022Updated 3 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago