weng-lab / TEMP2Links
Algorithm to detect germline and de novo transposon insertions
☆28Updated last month
Alternatives and similar repositories for TEMP2
Users that are interested in TEMP2 are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- ☆30Updated 9 months ago
- ☆28Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- Variant annotation and merging pipeline☆34Updated last week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- A pipeline for isoseq☆23Updated 6 years ago
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 months ago
- ☆29Updated 4 years ago
- ☆42Updated last year
- Evolutionary Transcriptomics with R☆43Updated last week
- Structural variant caller☆54Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Structural variant merging tool☆49Updated 9 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆80Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago