PhyloSofS-Team / thoraxeLinks
Use Thor's Axe to cut exons into their evolutionary building blocks
☆12Updated 2 months ago
Alternatives and similar repositories for thoraxe
Users that are interested in thoraxe are comparing it to the libraries listed below
Sorting:
- A Julia package for handle genome graph in the GFA format.☆11Updated 3 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆37Updated 5 months ago
- ☆15Updated 6 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- A console-based alignment viewer☆116Updated 5 months ago
- ☆25Updated 4 years ago
- ☆17Updated last year
- Multiple sequence alignment visualizer☆30Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 6 months ago
- Database of virus RdRP barcode sequences☆16Updated last year
- Nail is an Alignment Inference tooL☆54Updated last week
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 9 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 2 weeks ago
- Find common blocks and differences between DNA sequences☆42Updated 3 weeks ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆25Updated last year
- ☆31Updated last year
- A neural network model to predict splice site usage and splicing-altering mutations☆15Updated 4 months ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Updated last year
- Python package to analyze DNA methylation data☆44Updated last month
- Simple terminal alignment viewer☆85Updated 4 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- ☆83Updated 2 months ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆38Updated last month
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago
- Associated code for EvoWeaver publication☆16Updated 6 months ago
- sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.☆39Updated last year
- Applied Python Programming for Life Scientists☆25Updated 4 years ago
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆13Updated 3 years ago