BorgwardtLab / networkGWAS
Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype of interest.
☆15Updated last year
Alternatives and similar repositories for networkGWAS
Users that are interested in networkGWAS are comparing it to the libraries listed below
Sorting:
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated last year
- CADD-SV – a framework to score the effect of structural variants☆14Updated 2 months ago
- Long read to rMATS☆31Updated 2 years ago
- ☆13Updated 7 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 8 months ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 5 years ago
- FunctionaL Omics Processing platform☆13Updated 9 months ago
- This repository contains the source code for the tappAS application. See README for details.☆16Updated 2 years ago
- GWAS and rare variants tests at high speed using regenie☆14Updated 5 months ago
- WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus☆10Updated 6 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- ☆21Updated 11 months ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated 10 months ago
- Documentation for vcfR☆11Updated this week
- WES HLA Typing based on multiple alternative tools☆16Updated 4 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 4 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆15Updated 6 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- ☆26Updated last month
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 6 months ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last month
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated 2 years ago