Alternatives and similar repositories for networkGWAS

Users that are interested in networkGWAS are comparing it to the libraries listed below

• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆24Updated 2 years ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆17Updated 8 months ago
• bbglab / openvariant
  read, parse and operate different multiple input file formats with OpenVariant
  ☆14Updated 2 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• srbehera / DRAGEN_Analysis
  ☆38Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 10 months ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Updated 6 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆32Updated 3 weeks ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 4 years ago
• js2264 / HiCExperiment
  Importing and manipulating Hi-C data in R
  ☆11Updated 6 months ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆25Updated last year
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated last year
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 2 months ago
• mritchielab / restrander
  ☆12Updated last month
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated last month
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆28Updated last year
• jasonwong-lab / LocusMasterTE
  Integrating long read sequencing enhances short read-based locus-specific transposable element quantification
  ☆10Updated 8 months ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• SFGLab / ConsensuSV-pipeline
  Automatised pipeline of ConsensuSV workflow.
  ☆24Updated 2 years ago