egluckthaler / starfishLinks
starfish: a modular toolkit for giant mobile element annotation
☆35Updated last year
Alternatives and similar repositories for starfish
Users that are interested in starfish are comparing it to the libraries listed below
Sorting:
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 3 weeks ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆45Updated last year
- Bacterial GWAS analysis☆46Updated last week
- ☆77Updated 7 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Synteny Imager☆65Updated last month
- HyPhy standalone analyses☆51Updated 3 weeks ago
- Discover and annotate the virome☆58Updated 3 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆39Updated 2 months ago
- Bifrost graph gene caller.☆98Updated last week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated last month
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Updated last year
- k-mer learning materials☆83Updated 11 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆79Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- ☆33Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆34Updated last year
- whole genome MLST analysis☆50Updated 7 months ago