cancerit / telomerecat
Telomerecat: The telomere computational analysis tool
☆20Updated 3 years ago
Alternatives and similar repositories for telomerecat:
Users that are interested in telomerecat are comparing it to the libraries listed below
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 5 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- ☆21Updated 3 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- a bucket of bioinformatics scripts☆13Updated 4 months ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 weeks ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆23Updated 7 months ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆30Updated 3 weeks ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Allele-specific copy number estimation with whole genome sequencing☆23Updated last year
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- R package for DNA methylation analysis☆17Updated 7 months ago
- ☆17Updated 2 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- A program for summarising CpG methylation patterns☆19Updated 8 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago