cancerit / telomerecatLinks
Telomerecat: The telomere computational analysis tool
☆21Updated 4 years ago
Alternatives and similar repositories for telomerecat
Users that are interested in telomerecat are comparing it to the libraries listed below
Sorting:
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- ☆23Updated 10 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 3 weeks ago
- R package for DNA methylation analysis☆19Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- ☆25Updated 6 months ago
- A software for calculating telomere length☆72Updated 7 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ☆21Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆51Updated 6 years ago
- Allele-specific copy number estimation with whole genome sequencing☆23Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆20Updated 3 years ago
- Tools for merging Tandem Repeat VCF files☆36Updated 6 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated 10 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago