gersteinlab / HiC-spectorLinks
Spectral and reproducibility analysis of Hi-C contact maps
☆13Updated 4 years ago
Alternatives and similar repositories for HiC-spector
Users that are interested in HiC-spector are comparing it to the libraries listed below
Sorting:
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- R package to evaluate reproducibility of Hi-C data☆10Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- ☆12Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆13Updated last month
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
- ☆14Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Updated 6 years ago
- ☆13Updated 5 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Red-C data processing☆15Updated 2 years ago
- Cloud-based single-cell copy-number variation analysis tool☆52Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year