Alternatives and similar repositories for HiC-spector:

Users that are interested in HiC-spector are comparing it to the libraries listed below

• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• ratschlab / mmr
  A tool for Read Multi-Mapper Resolution
  ☆23Updated 8 years ago
• qunhualilab / hicrep
  R package to evaluate reproducibility of Hi-C data
  ☆10Updated 2 years ago
• CollasLab / edd
  Enriched Domain Detector for ChIP-seq data
  ☆16Updated 2 years ago
• keleslab / mHiC
  ☆12Updated 4 years ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆24Updated 2 weeks ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 6 months ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆17Updated last year
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆38Updated 3 years ago
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 2 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• nvictus / lavaburst
  Chromatin domains bursting with flavor
  ☆12Updated 5 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• dphansti / mango
  chia pet analysis software
  ☆25Updated 6 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆41Updated 2 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 8 months ago
• deeptools / HiCMatrix
  ☆12Updated 11 months ago
• mskilab-org / dryclean
  Irons out wrinkles in noisy coverage data using robust PCA
  ☆13Updated this week
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 8 years ago
• deeptools / HiCBrowser
  Simple web browser to visualize HiC tracks
  ☆18Updated 5 years ago
• hammerlab / awesome-clonality
  A curated list of awesome clonality and tumor heterogeneity resources
  ☆15Updated 5 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆22Updated 6 years ago
• abyzovlab / vcf2diploid
  personal genome constructor
  ☆9Updated 9 months ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated 3 weeks ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆18Updated this week
• yuelab / BUTLRTools
  ☆15Updated 8 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year