gersteinlab / HiC-spectorLinks
Spectral and reproducibility analysis of Hi-C contact maps
☆13Updated 4 years ago
Alternatives and similar repositories for HiC-spector
Users that are interested in HiC-spector are comparing it to the libraries listed below
Sorting:
- R package to evaluate reproducibility of Hi-C data☆10Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆12Updated 5 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Updated 8 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- ☆13Updated 3 weeks ago
- chia pet analysis software☆25Updated 6 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- ☆13Updated 2 weeks ago
- ☆16Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Cloud-based single-cell copy-number variation analysis tool☆51Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 11 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago