gersteinlab / HiC-spector
Spectral and reproducibility analysis of Hi-C contact maps
☆12Updated 4 years ago
Alternatives and similar repositories for HiC-spector:
Users that are interested in HiC-spector are comparing it to the libraries listed below
- R package to evaluate reproducibility of Hi-C data☆10Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆15Updated 8 years ago
- chia pet analysis software☆25Updated 6 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆12Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- ☆16Updated 5 years ago