gersteinlab / HiC-spector
Spectral and reproducibility analysis of Hi-C contact maps
☆12Updated 3 years ago
Alternatives and similar repositories for HiC-spector:
Users that are interested in HiC-spector are comparing it to the libraries listed below
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- R package to evaluate reproducibility of Hi-C data☆10Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆11Updated last year
- Chromatin segmentation in R☆19Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 9 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Paired Genomic Loci Tool Suite☆30Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 3 months ago
- gkmSVM R package☆17Updated 7 years ago
- ☆25Updated 9 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆27Updated 6 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- ☆15Updated 7 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- ☆12Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆22Updated 3 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 4 years ago
- a pipeline for accurate detection of methylated cytosine and differentially methylated regions☆9Updated 9 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 4 months ago
- The command-line interface to GGD☆42Updated 2 years ago