Alternatives and similar repositories for chrov:

Users that are interested in chrov are comparing it to the libraries listed below

• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last week
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆40Updated last year
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆34Updated 2 weeks ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆31Updated 6 years ago
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆33Updated last month
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated last year
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆22Updated last year
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆31Updated 6 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 2 years ago
• ryangreenj / bioinformatics_tool_recommendation
  ☆19Updated last year
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated 11 months ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆31Updated 3 years ago
• chanzuckerberg / czid-dedup
  deduplicate FASTA and FASTQ files
  ☆19Updated 2 years ago
• jakevc / karyopype
  A chromosomal visualization package for python.
  ☆13Updated last year
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆27Updated 3 weeks ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆31Updated 7 months ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 2 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆22Updated last year
• UCSC-nanopore-cgl / margin
  ☆29Updated 2 years ago
• daihang16 / nubeamdedup
  Removing PCR duplicates for sequencing reads.
  ☆13Updated 4 years ago
• 0xTCG / haptreex
  Haplotype phaser for next-generation sequencing data
  ☆13Updated 3 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆44Updated 2 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago