keleslab / mHiC
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for mHiC
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- ☆21Updated 2 weeks ago
- Genomic Association Tester☆29Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- Evolutionary Transcriptomics with R☆41Updated this week
- ☆16Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 weeks ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- GENome Organisation Visual Analytics☆13Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- ☆23Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆43Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- ☆33Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- ☆35Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆19Updated last year
- ☆21Updated 5 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- ☆22Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago