keleslab / mHiCLinks
☆12Updated 5 years ago
Alternatives and similar repositories for mHiC
Users that are interested in mHiC are comparing it to the libraries listed below
Sorting:
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- A software for calculating telomere length☆73Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆57Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- ☆24Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Updated 5 years ago
- ☆38Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- ☆34Updated 2 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- ☆30Updated 6 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- R package for DNA methylation analysis☆20Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- BigWig and BAM utilities☆100Updated last year
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆25Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago