keleslab / mHiCLinks
☆12Updated 5 years ago
Alternatives and similar repositories for mHiC
Users that are interested in mHiC are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆44Updated last week
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 9 months ago
- ☆23Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated 2 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- ☆36Updated 2 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Telomerecat: The telomere computational analysis tool☆21Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- Improving gene isoform quantification with miniQuant☆23Updated 2 weeks ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- ☆45Updated 8 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Updated 4 years ago
- ☆28Updated 7 months ago
- RNA-seq workflow: differential transcript usage☆22Updated last year