Estimate PTM hotspots in protein sequence alignments
☆14Feb 6, 2019Updated 7 years ago
Alternatives and similar repositories for ptm_hotspots
Users that are interested in ptm_hotspots are comparing it to the libraries listed below
Sorting:
- R package for functionally scoring phosphorylation sites☆22Nov 3, 2019Updated 6 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Feb 12, 2026Updated 2 weeks ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 5 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Dec 11, 2025Updated 2 months ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- Publication Page for ArchR Manuscript 2020☆23Aug 17, 2021Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- AlphaFind: Discover structure similarity across the entire known proteome☆24Nov 5, 2025Updated 3 months ago
- Code for the analyses in the human reference interactome paper.☆28Dec 8, 2022Updated 3 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 5 months ago
- Python Clone of the game "Color Switch"☆10Oct 15, 2018Updated 7 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 10 years ago
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 2 years ago
- ☆10May 31, 2022Updated 3 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆25Jan 13, 2026Updated last month
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35May 14, 2020Updated 5 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 4 months ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- ☆10Dec 4, 2021Updated 4 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 4 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆30Updated this week
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- ☆10Nov 3, 2023Updated 2 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 6 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- Secretory Pathway Reconstruction for Human, CHO, and Mouse☆12Aug 24, 2021Updated 4 years ago
- E(3) equivariant graph neural network for PPI site prediction☆10Sep 18, 2023Updated 2 years ago
- This is a project extending the solution to the kaggle-connectx problem statement. Here I have made the frontend UI for the same and adde…☆10Mar 8, 2021Updated 4 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 7 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Create a citation graph from pubmed data using R☆10Nov 4, 2016Updated 9 years ago
- GLEE: Geometric Laplacian Eigenmap Embedding☆11Mar 7, 2020Updated 5 years ago
- ☆13Feb 12, 2026Updated 2 weeks ago
- ☆12Aug 3, 2023Updated 2 years ago