califano-lab / OncoSig
Code to run OncoSig Analyses
☆18Updated 4 years ago
Alternatives and similar repositories for OncoSig:
Users that are interested in OncoSig are comparing it to the libraries listed below
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Explore the cancer relevance of your gene list☆50Updated 3 weeks ago
- BPNet manuscript code.☆11Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 7 months ago
- XEnograft Visualization & Analysis☆11Updated 3 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Summary statistics for repertoires☆16Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- a R package to identify neoantigens from NGS data☆19Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- ☆17Updated 10 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆15Updated 2 years ago
- Tools for assessing clustering robustness☆23Updated last week
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago