Alternatives and similar repositories for Diffuse2Direct:

Users that are interested in Diffuse2Direct are comparing it to the libraries listed below

• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 2 months ago
• Barabasi-Lab / COVID-19
  Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
  ☆27Updated 3 years ago
• emreg00 / toolbox
  Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
  ☆109Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆49Updated last week
• ShenLab / gMVP
  ☆20Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• haiyuan-yu-lab / PIONEER
  ☆23Updated 3 weeks ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 5 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆84Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆16Updated 2 years ago
• ntranoslab / esm-variants
  ☆69Updated last year
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆58Updated last year
• MaayanLab / L1000toRNAseq
  ☆14Updated 2 years ago
• snap-stanford / multiscale-interactome
  ☆65Updated last year
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆66Updated 2 months ago
• Case-esaC / iDrug
  ☆19Updated 4 years ago
• astrazeneca-cgr-publications / DrugnomeAI-release
  ☆15Updated 4 months ago
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆47Updated 3 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated 5 months ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆42Updated 3 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆60Updated last year
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆64Updated 2 years ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆29Updated last month
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆34Updated 4 months ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆50Updated 7 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆48Updated 8 months ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆13Updated 3 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated last year
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆30Updated 2 years ago