danasilv / Diffuse2Direct
Orientation of the protein-protein interaction network using network diffusion techniques
☆15Updated 3 years ago
Alternatives and similar repositories for Diffuse2Direct:
Users that are interested in Diffuse2Direct are comparing it to the libraries listed below
- Network-based project to explore gene connectivity through biological scales☆23Updated 4 months ago
- Knowledge-primed neural networks☆35Updated last year
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆54Updated 2 weeks ago
- ☆15Updated 5 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 3 years ago
- Gene ontology (GO) semantic similarity library for Python☆21Updated 6 years ago
- Functional Embedding of Gene Signatures☆39Updated 11 months ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆63Updated 2 years ago
- ☆23Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆21Updated last week
- Biological Network Integration using Convolutions☆61Updated last year
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆109Updated 2 years ago
- Library of Integrated Cellular Signatures L1000☆30Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- A 3-Dimensional View of Human Metabolism and Disease☆26Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- ☆30Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆60Updated last year
- ☆65Updated last year
- repository containing analysis scripts and auxiliary files☆32Updated 4 years ago
- Connectivity Map analysis in MATLAB☆42Updated 3 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆50Updated 9 months ago
- ☆23Updated 2 months ago
- HLA-II ligand predictor.☆39Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated 3 weeks ago
- ☆37Updated last year