milescsmith / ReductionWrappersLinks
R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
☆36Updated last year
Alternatives and similar repositories for ReductionWrappers
Users that are interested in ReductionWrappers are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆45Updated 5 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 6 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Cell type pipes for R☆52Updated last year
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- ☆16Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- Toolkit for Single-Cell Velocity☆58Updated 5 months ago
- ☆43Updated 4 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Extension of SpatialExperiment with sf☆56Updated 3 weeks ago
- Normalize CITEseq Data☆66Updated last month
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆32Updated 4 months ago
- ☆37Updated 9 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 3 months ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Updated 3 weeks ago
- R package containing the Cerebro application.☆40Updated 4 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 2 months ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- A database of useful gene signatures for single-cell analysis☆27Updated 7 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year