R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
☆36Dec 30, 2024Updated last year
Alternatives and similar repositories for ReductionWrappers
Users that are interested in ReductionWrappers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆28Jun 21, 2023Updated 3 years ago
- ☆27Sep 2, 2021Updated 4 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆32May 20, 2025Updated last year
- R package with Classes and Methods for Fast Memory-Efficient Boolean Selections☆13May 6, 2025Updated last year
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).☆85May 14, 2024Updated 2 years ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 6 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆76Feb 17, 2020Updated 6 years ago
- data frames that print as ggplots☆14Oct 13, 2020Updated 5 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- A model-based downsampling algorithm for single-cell☆10Jan 21, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for analysis of single-cell data using graphs☆11Jun 8, 2023Updated 3 years ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- Dimension Reduction and Estimation Methods☆57Mar 20, 2026Updated 4 months ago
- Kernel k Nearest Neighbors in R☆17Aug 1, 2026Updated last week
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated 2 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- ACTIONet single-cell analysis framework☆47Sep 16, 2024Updated last year
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆30Feb 20, 2024Updated 2 years ago
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 9 months ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Jun 17, 2026Updated last month
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- ☆51Jan 16, 2020Updated 6 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 5 years ago
- Dimensionality reduction for exponential family data by extending PCA☆23Aug 4, 2018Updated 8 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆63May 23, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆14Mar 2, 2020Updated 6 years ago
- ☆15Jul 11, 2023Updated 3 years ago
- Functions for single cell data analysis☆34May 28, 2021Updated 5 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 3 months ago
- An R package providing datasets useful for testing clustering algorithms☆17Apr 11, 2018Updated 8 years ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆26Jun 28, 2024Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago