R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
☆36Dec 30, 2024Updated last year
Alternatives and similar repositories for ReductionWrappers
Users that are interested in ReductionWrappers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package: Manifold learning in R☆13Apr 7, 2020Updated 6 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- ☆27Sep 2, 2021Updated 4 years ago
- R package with Classes and Methods for Fast Memory-Efficient Boolean Selections☆13May 6, 2025Updated 11 months ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pathway-based trajectory inference method for time-series scRNAseq data☆25May 18, 2021Updated 4 years ago
- Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).☆84May 14, 2024Updated last year
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆32May 20, 2025Updated 11 months ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- data frames that print as ggplots☆14Oct 13, 2020Updated 5 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆75Feb 17, 2020Updated 6 years ago
- R package for analysis of single-cell data using graphs☆11Jun 8, 2023Updated 2 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dimension Reduction and Estimation Methods☆55Mar 20, 2026Updated last month
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 2 weeks ago
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated last year
- Kernel k Nearest Neighbors in R☆17Apr 20, 2026Updated last week
- ACTIONet single-cell analysis framework☆44Sep 16, 2024Updated last year
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆31Feb 20, 2024Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆124Oct 31, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- Dimensionality reduction for exponential family data by extending PCA☆23Aug 4, 2018Updated 7 years ago
- ☆50Jan 16, 2020Updated 6 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Dec 15, 2022Updated 3 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Capybara: A computational tool to measure cell identity and fate transitions☆62May 23, 2022Updated 3 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- ☆13Jul 11, 2023Updated 2 years ago
- ☆14Mar 2, 2020Updated 6 years ago
- An R package providing datasets useful for testing clustering algorithms☆17Apr 11, 2018Updated 8 years ago
- Functions for single cell data analysis☆32May 28, 2021Updated 4 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated last year