theislab / chemCPA
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
☆112Updated 2 months ago
Alternatives and similar repositories for chemCPA:
Users that are interested in chemCPA are comparing it to the libraries listed below
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆98Updated 7 months ago
- Models and datasets for perturbational single-cell omics☆153Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated 2 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆119Updated last month
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆67Updated 2 months ago
- Single-Cell (Perturbation) Model Library☆49Updated 3 weeks ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆88Updated 2 weeks ago
- ☆60Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆128Updated 5 months ago
- A model developed for the generation of scRNA-seq data☆58Updated last month
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆42Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆22Updated 2 weeks ago
- Contextual AI models for single-cell protein biology☆83Updated last month
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆52Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 2 months ago
- ☆59Updated 7 months ago
- ☆77Updated 8 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆80Updated last year
- CellBox: Interpretable Machine Learning for Perturbation Biology☆53Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆138Updated last year
- ☆30Updated last week
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆247Updated 2 months ago
- Images and other data from the JUMP Cell Painting Consortium☆168Updated last month
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆35Updated last year
- Diffusion model for gene regulatory network inference.☆17Updated last week
- ☆59Updated last year
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆67Updated 2 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆46Updated this week