Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
☆156Feb 6, 2025Updated last year
Alternatives and similar repositories for chemCPA
Users that are interested in chemCPA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆149Aug 14, 2024Updated last year
- Notebooks for CPA figures☆15Dec 9, 2022Updated 3 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆186Sep 7, 2023Updated 2 years ago
- ACTIONet single-cell analysis framework☆46Sep 16, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆386Feb 1, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆183Feb 25, 2025Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆176Oct 31, 2024Updated last year
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 10 months ago
- Single cell perturbation prediction☆352Dec 5, 2024Updated last year
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆71Jul 3, 2026Updated 3 weeks ago
- Single-cell perturbation effects prediction benchmark☆92May 6, 2026Updated 2 months ago
- ☆34Oct 4, 2020Updated 5 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆622Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Supervised Training of Conditional Monge Maps☆19Oct 30, 2023Updated 2 years ago
- ☆36Jan 21, 2025Updated last year
- ☆70Jul 21, 2023Updated 3 years ago
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 9 months ago
- ☆11Dec 8, 2023Updated 2 years ago
- ☆15Jul 8, 2022Updated 4 years ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆84Dec 13, 2024Updated last year
- ☆39Apr 16, 2025Updated last year
- Single-cell perturbation analysis☆338Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- ☆13Jun 16, 2025Updated last year
- ☆89Feb 17, 2026Updated 5 months ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 6 months ago
- Drug Response Variational Autoencoder☆34Apr 4, 2019Updated 7 years ago
- ☆26Jan 10, 2025Updated last year
- Quantifying experimental perturbations at single cell resolution☆115Sep 27, 2024Updated last year
- ☆22Aug 28, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Modeling complex perturbations with CellFlow☆151Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,667Updated this week
- Implements the blood brain barrier score described in: J. Med. Chem. 2019, 62, 21, 9824-9836 (https://doi.org/10.1021/acs.jmedchem.9b0122…☆14Sep 27, 2020Updated 5 years ago
- ☆85Jan 9, 2026Updated 6 months ago
- ☆1,608Apr 29, 2026Updated 2 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 11 months ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆13Mar 8, 2025Updated last year