seung-lab / igneousLinks
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
☆63Updated 3 weeks ago
Alternatives and similar repositories for igneous
Users that are interested in igneous are comparing it to the libraries listed below
Sorting:
- Read and write Neuroglancer datasets programmatically.☆168Updated last week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 5 months ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆20Updated last week
- Tools for distributed alignment of massive images☆90Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 weeks ago
- ☆13Updated last month
- A library to facilitate machine learning on multi-dimensional images.☆87Updated 2 weeks ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆26Updated last month
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated 2 weeks ago
- 🌈☆66Updated 2 months ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 9 months ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- WebGL-based viewer for volumetric data☆24Updated last week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆132Updated last week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆21Updated 7 months ago
- A napari plugin for making animations☆89Updated 3 weeks ago
- Block-wise operations for large nD volumes☆43Updated last week
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last week
- ☆49Updated 3 weeks ago
- GPU-based 3D non-rigid volumetric registration☆41Updated 4 months ago
- Specification for the bioimage.io model description file.☆21Updated last week
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 7 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated 2 months ago
- ☆33Updated 7 months ago
- 3D shape analysis using deep learning☆28Updated 2 months ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆37Updated 2 weeks ago