seung-lab / igneousLinks
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
☆65Updated 3 weeks ago
Alternatives and similar repositories for igneous
Users that are interested in igneous are comparing it to the libraries listed below
Sorting:
- Read and write Neuroglancer datasets programmatically.☆171Updated this week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 6 months ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆21Updated 2 weeks ago
- Tools for distributed alignment of massive images☆92Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- A library to facilitate machine learning on multi-dimensional images.☆87Updated last week
- ☆13Updated 3 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Updated 4 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆138Updated last month
- ☆49Updated 2 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Updated 11 months ago
- GPU-based 3D non-rigid volumetric registration☆43Updated 5 months ago
- WebGL-based viewer for volumetric data☆24Updated this week
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated 2 months ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- A napari plugin for itk-elastix☆40Updated last month
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 9 months ago
- A napari plugin for making animations☆95Updated last week
- 🌈☆67Updated 3 months ago
- ☆33Updated 9 months ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Updated 2 months ago
- Distributed segmentation for bio-image-analysis☆41Updated 3 weeks ago
- High quality visualization for volumetric image data☆55Updated last week
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last month
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Updated 7 months ago
- 3D shape analysis using deep learning☆29Updated 4 months ago
- Napari gaming☆17Updated 4 years ago