seung-lab / igneous
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
☆48Updated last week
Alternatives and similar repositories for igneous:
Users that are interested in igneous are comparing it to the libraries listed below
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 10 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- Read and write Neuroglancer datasets programmatically.☆146Updated 2 weeks ago
- WebGL-based viewer for volumetric data☆23Updated last week
- ☆36Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- Block-wise task scheduling for large nD volumes.☆30Updated last month
- Distributed segmentation for bio-image-analysis☆37Updated this week
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆13Updated this week
- ☆12Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated last week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆27Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆82Updated 3 weeks ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆15Updated 2 weeks ago
- 🌈☆55Updated last month
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Software package for neuron reconstruction and visualization☆38Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Tools for distributed alignment of massive images☆81Updated 3 weeks ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated last month
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- CloudReg☆11Updated last year
- Python SDK for interacting with the BossDB REST API☆21Updated 2 weeks ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- 3D/4D volumetric rendering of microscopy data☆23Updated 2 months ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- Conversion of neuroimaging data for display in Neuroglancer☆27Updated 5 months ago
- www.vaa3d.org☆78Updated 7 years ago