seung-lab / igneousLinks
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
☆63Updated this week
Alternatives and similar repositories for igneous
Users that are interested in igneous are comparing it to the libraries listed below
Sorting:
- Read and write Neuroglancer datasets programmatically.☆170Updated this week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 5 months ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆21Updated this week
- Tools for distributed alignment of massive images☆91Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆59Updated last month
- A library to facilitate machine learning on multi-dimensional images.☆87Updated 2 weeks ago
- WebGL-based viewer for volumetric data☆24Updated last week
- 🌈☆67Updated 3 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆26Updated this week
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated last month
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆33Updated 9 months ago
- ☆13Updated 2 months ago
- 3D shape analysis using deep learning☆28Updated 3 months ago
- A draft specification for the nifti-zarr format☆16Updated last month
- A napari plugin for itk-elastix☆39Updated last month
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆135Updated last week
- GPU-based 3D non-rigid volumetric registration☆41Updated 4 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated 2 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Distributed segmentation for bio-image-analysis☆40Updated this week
- High quality visualization for volumetric image data☆54Updated last week
- A napari plugin for making animations☆93Updated 2 weeks ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 6 months ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Updated 7 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆21Updated 8 months ago
- Block-wise operations for large nD volumes☆43Updated 2 weeks ago
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago