Alternatives and similar repositories for NEURD:

Users that are interested in NEURD are comparing it to the libraries listed below

• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated 3 weeks ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated last week
• CAVEconnectome / MeshParty
  ☆36Updated 3 weeks ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated this week
• funkelab / lsd
  🌈
  ☆54Updated 2 weeks ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆13Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated this week
• ashapsoncoe / h01
  ☆14Updated last year
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆47Updated 3 weeks ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 5 months ago
• CAVEconnectome / nglui
  ☆11Updated 3 weeks ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated last week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated 2 weeks ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆13Updated last month
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 9 months ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆26Updated last week
• marissaweis / ssl_neuron
  Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
  ☆11Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated last week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated last week
• erturklab / delivr_cfos
  End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR
  ☆33Updated 2 weeks ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆17Updated last week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆36Updated 10 months ago
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated last week
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆33Updated 2 years ago
• oanegros / Blender_for_Biologists_2023
  ☆38Updated 8 months ago
• AllenInstitute / asap-modules
  Shared repo for EM connectomics and Array Tomography render based image processing modules
  ☆14Updated 3 weeks ago
• uhlmanngroup / muMatch
  Pipeline for putting surface meshes into correspondence
  ☆26Updated 2 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 2 months ago