reimerlab / NEURDLinks
NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
☆19Updated 3 months ago
Alternatives and similar repositories for NEURD
Users that are interested in NEURD are comparing it to the libraries listed below
Sorting:
- Block-wise task scheduling for large nD volumes.☆32Updated 5 months ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆18Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆24Updated last week
- MorphoFeatures code and data☆21Updated 2 years ago
- ☆37Updated last week
- Read and write Neuroglancer datasets programmatically.☆156Updated last week
- Tools for distributed alignment of massive images☆86Updated 2 weeks ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated last month
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆52Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated this week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated 2 months ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆31Updated last month
- 🌈☆60Updated 4 months ago
- GPU-based 3D non-rigid volumetric registration☆41Updated this week
- ☆12Updated 2 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- A napari plugin for making animations☆87Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆136Updated 3 weeks ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Updated 2 months ago
- Multi-Object Tracker using Integer Linear Equations☆37Updated this week
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- ☆46Updated 2 weeks ago
- Pipeline for putting surface meshes into correspondence☆26Updated 2 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆102Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- ☆45Updated 5 years ago
- A library to facilitate machine learning on multi-dimensional images.☆85Updated 3 weeks ago
- Scalable Optical Flow-based Image Montaging and Alignment☆80Updated last month
- 3D shape analysis using deep learning☆26Updated last year