funkelab / lsdLinks
π
β67Updated 3 months ago
Alternatives and similar repositories for lsd
Users that are interested in lsd are comparing it to the libraries listed below
Sorting:
- Simple watershed and agglomeration library for affinity graphs.β27Updated 4 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ188Updated this week
- MorphoFeatures code and dataβ22Updated 2 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for β¦β39Updated this week
- Utils and convenience functions for large-scale bio-image analysis.β60Updated last month
- simple package for augmentation of n-dimensional arraysβ34Updated 2 years ago
- Read and write Neuroglancer datasets programmatically.β171Updated last week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.β65Updated 3 weeks ago
- Block-wise task scheduling for large nD volumes.β33Updated 10 months ago
- A library to facilitate machine learning on multi-dimensional images.β87Updated this week
- β22Updated last month
- β32Updated 6 months ago
- Deep Learning for EM Connectomicsβ16Updated 3 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Developmentβ32Updated 2 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.β35Updated 3 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.β29Updated 3 years ago
- Python package for deep learning based image to image transformationβ53Updated 2 months ago
- Easy Volumetric Segmentation with Deep Learningβ28Updated last week
- 3D shape analysis using deep learningβ29Updated 3 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeveβ¦β22Updated 2 years ago
- Tools for distributed alignment of massive imagesβ92Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by theβ¦β20Updated 4 years ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computationβ55Updated 7 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.β43Updated 6 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.β115Updated this week
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentationβ17Updated 4 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Imagesβ127Updated last year
- Multi-Object Tracker using Integer Linear Equationsβ38Updated last month
- Open source Python library for building bioimage analysis pipelinesβ188Updated this week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ouβ¦β55Updated last month