π
β70Oct 10, 2025Updated 9 months ago
Alternatives and similar repositories for lsd
Users that are interested in lsd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Block-wise task scheduling for large nD volumes.β32May 4, 2026Updated 2 months ago
- Deep Learning for EM Connectomicsβ16Aug 18, 2022Updated 3 years ago
- Simple watershed and agglomeration library for affinity graphs.β30Sep 18, 2025Updated 10 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ196Updated this week
- A library to facilitate machine learning on multi-dimensional images.β91Jul 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Resources for Heinrich et al., 2021β20May 28, 2021Updated 5 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Moβ¦β24Updated this week
- β22Jan 6, 2026Updated 6 months ago
- Affinity based segmentation algorithms and toolsβ12May 12, 2025Updated last year
- A curated list of resources for 3D segmentation of neurites in EM imagesβ58Mar 11, 2024Updated 2 years ago
- Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentationβ13Jul 16, 2023Updated 3 years ago
- Accepted by ISBI 2022 (Oral)β39Apr 9, 2022Updated 4 years ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolysoβ¦β13May 15, 2023Updated 3 years ago
- Utility functions for large-scale bio-image analysis.β64Jul 1, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python scripts to read and write the CREMI hdf5 file format.β39Mar 21, 2023Updated 3 years ago
- Block-wise operations for large nD volumesβ45Updated this week
- Neurotransmitter prediction from EM.β16Feb 28, 2025Updated last year
- Open source volume electron microscopy (vEM) datasets for connectomics.β18Nov 13, 2024Updated last year
- Aligner for large scale serial section image dataβ19Jul 7, 2023Updated 3 years ago
- The mutex watershed for image segmentation.β68May 6, 2021Updated 5 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.β69Updated this week
- Distributed segmentation for bio-image-analysisβ42Jun 5, 2026Updated last month
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learningβ32May 28, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Automated Segmentation of cellular substructures in Electron Microscopyβ18Jan 28, 2026Updated 5 months ago
- Tool for graph-based image segmentation and analysisβ22Nov 12, 2017Updated 8 years ago
- β12Mar 25, 2022Updated 4 years ago
- Cookiecutter for napari pluginsβ73Nov 6, 2024Updated last year
- Rust-first NIRS and spectroscopy file loading core with Python/R bindings and conformance fixturesβ22Updated this week
- Tensorflow and Pytorch Version of Malis Lossβ17Nov 8, 2020Updated 5 years ago
- official implementation of the PatchPerPix instance segmentation methodβ35Jun 27, 2023Updated 3 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM imagesβ38Aug 28, 2024Updated last year
- Flood-Filling Networks for instance segmentation in 3d volumes.β349Updated this week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scalable Optical Flow-based Image Montaging and Alignmentβ96Jul 7, 2026Updated 2 weeks ago
- Domain Adaptive Mitochondria Segmentation via Enforcing Inter-Section Consistencyβ16Jul 16, 2023Updated 3 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.β45Jul 28, 2025Updated 11 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.β61Apr 24, 2026Updated 2 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for β¦β42Jul 10, 2026Updated last week
- β13Feb 27, 2024Updated 2 years ago
- β15Mar 26, 2024Updated 2 years ago