🌈
☆70Oct 10, 2025Updated 10 months ago
Alternatives and similar repositories for lsd
Users that are interested in lsd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Block-wise task scheduling for large nD volumes.☆33Updated this week
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 4 years ago
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 11 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆200Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆93Aug 3, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- ☆17Feb 3, 2018Updated 8 years ago
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆24Aug 23, 2026Updated last week
- ☆22Jan 6, 2026Updated 7 months ago
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- A curated list of resources for 3D segmentation of neurites in EM images☆59Mar 11, 2024Updated 2 years ago
- Neurotransmitter prediction from EM.☆17Feb 28, 2025Updated last year
- Accepted by ISBI 2022 (Oral)☆39Apr 9, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆13May 15, 2023Updated 3 years ago
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated last month
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 3 years ago
- Block-wise operations for large nD volumes☆45Updated this week
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Aug 17, 2026Updated last week
- ☆64Updated this week
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Aug 1, 2026Updated 3 weeks ago
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning☆32May 28, 2022Updated 4 years ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 7 months ago
- Cookiecutter for napari plugins☆72Nov 6, 2024Updated last year
- Tensorflow and Pytorch Version of Malis Loss☆17Nov 8, 2020Updated 5 years ago
- official implementation of the PatchPerPix instance segmentation method☆36Jun 27, 2023Updated 3 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated 2 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆350Updated this week
- Scalable Optical Flow-based Image Montaging and Alignment☆101Aug 6, 2026Updated 3 weeks ago
- Domain Adaptive Mitochondria Segmentation via Enforcing Inter-Section Consistency☆16Jul 16, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆43Jul 10, 2026Updated last month
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 4 months ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆26Dec 26, 2022Updated 3 years ago
- ☆16Mar 26, 2024Updated 2 years ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- Automatic segmentation of electron microscopy volumes☆80Jan 15, 2021Updated 5 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week