funkelab / lsd

Related projects ⓘ

Alternatives and complementary repositories for lsd

• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆19Updated last week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆48Updated last month
• ilastik / nature_methods_multicut_pipeline
  ☆19Updated 3 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆37Updated last year
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆78Updated last month
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆18Updated last year
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆171Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆27Updated last week
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆76Updated this week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆75Updated last week
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated last year
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆49Updated 5 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 4 months ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆40Updated 5 months ago
• AllenCell / aics-ml-segmentation
  ☆30Updated 2 years ago
• weigertlab / trackastra
  ☆53Updated 2 weeks ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images
  A curated list of resources for 3D segmentation of neurites in EM images
  ☆45Updated 8 months ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆31Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆44Updated last week
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆12Updated 3 years ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆27Updated last year
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 weeks ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆63Updated 3 years ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆18Updated last year
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆66Updated 2 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆27Updated 3 weeks ago