π
β70Oct 10, 2025Updated 11 months ago
Alternatives and similar repositories for lsd
Users that are interested in lsd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Block-wise task scheduling for large nD volumes.β34Sep 2, 2026Updated 2 weeks ago
- Deep Learning for EM Connectomicsβ16Aug 18, 2022Updated 4 years ago
- Simple watershed and agglomeration library for affinity graphs.β31Sep 18, 2025Updated last year
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ201Updated this week
- A library to facilitate machine learning on multi-dimensional images.β93Sep 7, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).β11Jun 23, 2021Updated 5 years ago
- β17Feb 3, 2018Updated 8 years ago
- Resources for Heinrich et al., 2021β20May 28, 2021Updated 5 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Moβ¦β24Updated this week
- β22Jan 6, 2026Updated 8 months ago
- Affinity based segmentation algorithms and toolsβ12May 12, 2025Updated last year
- A curated list of resources for 3D segmentation of neurites in EM imagesβ59Mar 11, 2024Updated 2 years ago
- Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentationβ14Jul 16, 2023Updated 3 years ago
- Accepted by ISBI 2022 (Oral)β39Apr 9, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolysoβ¦β14May 15, 2023Updated 3 years ago
- Utility functions for large-scale bio-image analysis.β64Jul 1, 2026Updated 2 months ago
- Python scripts to read and write the CREMI hdf5 file format.β39Mar 21, 2023Updated 3 years ago
- Block-wise operations for large nD volumesβ45Updated this week
- Open source volume electron microscopy (vEM) datasets for connectomics.β19Aug 17, 2026Updated last month
- β66Updated this week
- Aligner for large scale serial section image dataβ19Jul 7, 2023Updated 3 years ago
- The mutex watershed for image segmentation.β68May 6, 2021Updated 5 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.β69Sep 12, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Distributed segmentation for bio-image-analysisβ42Jun 5, 2026Updated 3 months ago
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learningβ32May 28, 2022Updated 4 years ago
- Automated Segmentation of cellular substructures in Electron Microscopyβ18Jan 28, 2026Updated 7 months ago
- Tool for graph-based image segmentation and analysisβ22Nov 12, 2017Updated 8 years ago
- β12Mar 25, 2022Updated 4 years ago
- Cookiecutter for napari pluginsβ72Nov 6, 2024Updated last year
- Tensorflow and Pytorch Version of Malis Lossβ17Nov 8, 2020Updated 5 years ago
- official implementation of the PatchPerPix instance segmentation methodβ36Jun 27, 2023Updated 3 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM imagesβ38Aug 28, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scalable Optical Flow-based Image Montaging and Alignmentβ102Sep 9, 2026Updated last week
- Domain Adaptive Mitochondria Segmentation via Enforcing Inter-Section Consistencyβ16Jul 16, 2023Updated 3 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.β46Jul 28, 2025Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for β¦β43Jul 10, 2026Updated 2 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.β61Apr 24, 2026Updated 4 months ago
- Flood filling networks for segmenting electron microscopy of neural tissueβ26Dec 26, 2022Updated 3 years ago
- β13Feb 27, 2024Updated 2 years ago