Alternatives and similar repositories for lsd:

Users that are interested in lsd are comparing it to the libraries listed below

• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated last month
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆21Updated 4 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last month
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆28Updated last week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated this week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆47Updated last week
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆33Updated 2 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated this week
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated 8 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆52Updated 9 months ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 9 months ago
• subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images
  A curated list of resources for 3D segmentation of neurites in EM images
  ☆49Updated last year
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated this week
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated this week
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆66Updated this week
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆24Updated last year
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆29Updated 2 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆89Updated this week
• weigertlab / trackastra
  ☆64Updated last month
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆13Updated 3 weeks ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 4 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆12Updated 3 years ago