seung-lab / chunkflowLinks
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
☆54Updated last week
Alternatives and similar repositories for chunkflow
Users that are interested in chunkflow are comparing it to the libraries listed below
Sorting:
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆49Updated this week
- Distributed segmentation for bio-image-analysis☆38Updated last month
- Block-wise task scheduling for large nD volumes.☆30Updated 2 months ago
- 🌈☆57Updated 2 months ago
- MorphoFeatures code and data☆21Updated 2 years ago
- A self-supervised denoising algorithm.☆26Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 2 months ago
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 4 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Tools for distributed alignment of massive images☆82Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 3 months ago
- A library to facilitate machine learning on multi-dimensional images.☆82Updated 3 weeks ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆18Updated last month
- Tools for handling FIB-SEM data and annotations☆22Updated 2 months ago
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- Process images using SimpleITK in napari☆21Updated last month
- Multi-Object Tracker using Integer Linear Equations☆32Updated 2 months ago
- Python image segmentation plugin☆31Updated 4 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- A napari plugin for itk-elastix☆38Updated last year
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆33Updated 2 months ago
- ☆23Updated last month
- ☆31Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago