Alternatives and similar repositories for chunkflow

Users that are interested in chunkflow are comparing it to the libraries listed below

• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆83Updated last week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆31Updated 3 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆57Updated 3 weeks ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆154Updated this week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated last week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated 3 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 2 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated last year
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆19Updated last month
• funkelab / lsd
  🌈
  ☆59Updated 3 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 4 months ago
• e11bio / volara
  ☆35Updated 2 weeks ago
• abcucberkeley / PetaKit5D
  ☆45Updated last week
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆60Updated last week
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆84Updated 3 weeks ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated last week
• imaris / ImarisWriter
  ☆37Updated last year
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last week
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 3 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 4 months ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆70Updated 8 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated last year
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• allen-cell-animated / agave
  ☆47Updated this week
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆65Updated last week
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 3 weeks ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 5 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago