Alternatives and similar repositories for openorganelle

Users that are interested in openorganelle are comparing it to the libraries listed below

• guiwitz / napari_demo
  ☆23Updated 4 years ago
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆19Updated last month
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆18Updated 9 months ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 5 months ago
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆18Updated 2 years ago
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆30Updated last year
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated 2 weeks ago
• InsightSoftwareConsortium / GetYourBrainTogether
  Get Your Brain Together Neuroimage Registration Workshops and Hackathons
  ☆21Updated last year
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 9 months ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆54Updated last month
• saalfeldlab / n5-viewer
  BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.
  ☆19Updated last month
• saalfeldlab / n5-zarr
  Zarr filesystem backend for N5
  ☆17Updated last week
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆54Updated 2 weeks ago
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆10Updated 7 months ago
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated 2 weeks ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆30Updated 3 weeks ago
• JaneliaSciComp / xarray-multiscale
  scalable multiscale image pyramids in python
  ☆29Updated last year
• napari / napari-animation
  A napari plugin for making animations
  ☆89Updated 3 weeks ago
• scalableminds / webknossos-libs
  Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
  ☆27Updated last week
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆57Updated 6 months ago
• morphometrics / morphometrics
  ☆22Updated 2 years ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading, writing and validating OME-Zarr (meta)data
  ☆36Updated this week
• mobie / mobie-viewer-fiji
  ☆41Updated last week
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• alisterburt / napari-workshops
  A JupyterBook site for napari workshop materials
  ☆10Updated 3 years ago
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆35Updated 8 months ago
• hanjinliu / impy
  Speed up coding/extending image analysis in Python.
  ☆35Updated 2 weeks ago
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago