seung-lab / kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
☆143Updated last week
Alternatives and similar repositories for kimimaro:
Users that are interested in kimimaro are comparing it to the libraries listed below
- An implementation of morphological contour interpolation☆30Updated this week
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆78Updated 2 weeks ago
- 3D Image Skeletonization Tools☆35Updated last year
- Python module to analyse skeleton (thin object) images☆120Updated last month
- Implementation of the DeepVesselNet deep learning network☆143Updated last year
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…☆5Updated this week
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆247Updated 6 months ago
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆157Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆66Updated 2 years ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆48Updated this week
- Simple pure-python module for reading and writing nrrd files.☆119Updated last week
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆104Updated 4 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆103Updated 8 months ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆65Updated 3 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆62Updated 2 months ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆221Updated 2 weeks ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.☆13Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆45Updated this week
- ☆28Updated 4 years ago
- Vessel and tube centerline extraction☆29Updated this week
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆74Updated 2 years ago
- Many additional segmentation tools for 3D Slicer's Segment Editor☆46Updated last month
- ☆91Updated this week
- Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the Universit…☆111Updated last year
- Utilities for reading and writing files created by 3D Slicer☆36Updated this week
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆32Updated 7 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆43Updated 7 months ago
- Official SuperElastix repository☆85Updated 5 years ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆145Updated 5 months ago