Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
☆211Jul 24, 2026Updated this week
Alternatives and similar repositories for kimimaro
Users that are interested in kimimaro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆88Nov 5, 2025Updated 8 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Updated this week
- 3D dense segmentation compression codec based on crack codes.☆17Jun 11, 2026Updated last month
- Read and write Neuroglancer datasets programmatically.☆174Updated this week
- Extraction of 3D skeletons from meshes.☆260Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Jun 11, 2026Updated last month
- 3D Image Skeletonization Tools☆37Oct 3, 2023Updated 2 years ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆267Updated this week
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆73Nov 16, 2022Updated 3 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆74Updated this week
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated last year
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆457Jun 17, 2026Updated last month
- Cylindrical Shape Decomposition☆16Dec 8, 2022Updated 3 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Automated quantification of fibrous networks☆13Mar 10, 2026Updated 4 months ago
- Centerline Extraction, Skeletonization Methods, and Interbranch/Pore Segment Measurements.☆20Nov 2, 2014Updated 11 years ago
- Implementation of the DeepVesselNet deep learning network☆155Jul 7, 2023Updated 3 years ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated last month
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Jul 14, 2026Updated last week
- MATLAB implementation of '2D and 3D Vascular Structures Enhancement via Multiscale Fractional Anisotropy Tensor (MFAT)'☆20Sep 17, 2018Updated 7 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated 3 months ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆42Jun 7, 2026Updated last month
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆31Jul 19, 2021Updated 5 years ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆27Feb 24, 2026Updated 5 months ago
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithm☆12Apr 9, 2021Updated 5 years ago
- ☆13Feb 4, 2020Updated 6 years ago
- Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.☆46Jul 10, 2026Updated 2 weeks ago
- Light microscopy simulation in python.☆54Jul 6, 2026Updated 2 weeks ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- WebGL-based viewer for volumetric data☆25Jul 13, 2026Updated last week
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 2 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.☆11Apr 15, 2024Updated 2 years ago
- An end-to-end framework for pulmonary airway analysis☆28Mar 30, 2026Updated 3 months ago
- This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", …☆85Feb 19, 2024Updated 2 years ago
- An ITK module to compute 3D thickness☆45May 27, 2026Updated last month