seung-lab / kimimaroLinks
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
☆152Updated 2 weeks ago
Alternatives and similar repositories for kimimaro
Users that are interested in kimimaro are comparing it to the libraries listed below
Sorting:
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆15Updated last month
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆80Updated 4 months ago
- Python module to analyse skeleton (thin object) images☆123Updated last month
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆68Updated 2 years ago
- An implementation of morphological contour interpolation☆33Updated last month
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆249Updated 3 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 11 months ago
- 3D Image Skeletonization Tools☆37Updated last year
- An open-source application for the analysis and visualization of segmented vasculature datasets☆114Updated last year
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…☆5Updated 4 months ago
- Official SuperElastix repository☆87Updated 6 years ago
- 2D/3D biopolymer network extraction and quantification.☆16Updated 2 years ago
- Utilities for reading and writing files created by 3D Slicer☆39Updated 4 months ago
- ☆31Updated 4 years ago
- Implementation of the DeepVesselNet deep learning network☆149Updated last year
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆44Updated last year
- 2d and 3d distance transform based skeletonization☆22Updated last year
- Simple pure-python module for reading and writing nrrd files.☆122Updated 4 months ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆62Updated 2 months ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- ShapeWorks☆114Updated this week
- Automated quantification of fibrous networks☆12Updated 3 months ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆238Updated last week
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆107Updated 5 years ago
- Volume Renderer with VTK☆80Updated 2 years ago
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆104Updated last week
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆53Updated 2 months ago
- ☆73Updated last month
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆156Updated last week
- A setup script to generate ITK Python Wheels☆64Updated 3 weeks ago