seung-lab / kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
☆136Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for kimimaro
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆72Updated 4 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆66Updated 2 years ago
- An implementation of morphological contour interpolation☆30Updated 2 months ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆101Updated 6 months ago
- Implementation of the DeepVesselNet deep learning network☆141Updated last year
- 3D Image Skeletonization Tools☆34Updated last year
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…☆5Updated 5 months ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆240Updated 4 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.☆13Updated 4 months ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- Volume Renderer with VTK☆72Updated 2 years ago
- 2d and 3d distance transform based skeletonization☆22Updated 11 months ago
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆156Updated last year
- Python module to analyse skeleton (thin object) images☆118Updated 3 weeks ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆141Updated 2 months ago
- Simple pure-python module for reading and writing nrrd files.☆116Updated 2 weeks ago
- Automated quantification of fibrous networks☆10Updated 4 months ago
- an image registration/augmentation/segmentation package☆166Updated last year
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆103Updated 4 years ago
- Vessel and tube centerline extraction☆28Updated 4 months ago
- 3D Slicer extension which contains a Segment Editor Effect that solidifies and extracts the surface of a segmentation☆29Updated 6 months ago
- Utilities for reading and writing files created by 3D Slicer☆34Updated 2 months ago
- Segmentation of lungs in 3D Computed Tomography (CT) scans via non-rigid image registration☆23Updated 4 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆211Updated 2 months ago
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆95Updated this week
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆47Updated 4 months ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆59Updated 2 weeks ago
- ShapeWorks☆103Updated last week
- Official SuperElastix repository☆85Updated 5 years ago
- ☆28Updated 4 years ago