seung-lab / kimimaroLinks
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
☆180Updated this week
Alternatives and similar repositories for kimimaro
Users that are interested in kimimaro are comparing it to the libraries listed below
Sorting:
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆260Updated 3 weeks ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated 3 weeks ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆123Updated last year
- An implementation of morphological contour interpolation☆34Updated 3 weeks ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆83Updated last week
- Python module to analyse skeleton (thin object) images☆138Updated last month
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆257Updated 2 months ago
- Command line tool for registration of very large 3D volumes.☆15Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆56Updated 4 months ago
- Utilities for reading and writing files created by 3D Slicer☆41Updated 9 months ago
- 3D Image Skeletonization Tools☆37Updated 2 years ago
- The Biomedical Image Segmentation App is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed …☆56Updated this week
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆52Updated last year
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆49Updated last year
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆57Updated 3 weeks ago
- ☆101Updated last month
- Automated quantification of fibrous networks☆12Updated 9 months ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆430Updated 2 weeks ago
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆110Updated 5 years ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆171Updated 5 months ago
- Simple pure-python module for reading and writing nrrd files.☆123Updated 9 months ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆54Updated this week
- Read and write Neuroglancer datasets programmatically.☆164Updated 2 weeks ago
- Fill holes in binary 2D & 3D images fast.☆28Updated 2 months ago
- Very fast greedy diffeomorphic registration code☆80Updated 6 months ago
- Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data☆180Updated 2 years ago
- 2D/3D biopolymer network extraction and quantification.☆16Updated 2 months ago
- ShapeWorks☆122Updated this week