Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
☆202May 18, 2026Updated last week
Alternatives and similar repositories for kimimaro
Users that are interested in kimimaro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆86Nov 5, 2025Updated 6 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆67May 16, 2026Updated last week
- Read and write Neuroglancer datasets programmatically.☆173Apr 24, 2026Updated last month
- Extraction of 3D skeletons from meshes.☆256Feb 25, 2026Updated 3 months ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Apr 28, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 3D Image Skeletonization Tools☆37Oct 3, 2023Updated 2 years ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆452May 5, 2026Updated 3 weeks ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆265Mar 18, 2026Updated 2 months ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆72May 18, 2026Updated last week
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆73Nov 16, 2022Updated 3 years ago
- Cylindrical Shape Decomposition☆16Dec 8, 2022Updated 3 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated last month
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated 11 months ago
- Automated quantification of fibrous networks☆12Mar 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Centerline Extraction, Skeletonization Methods, and Interbranch/Pore Segment Measurements.☆20Nov 2, 2014Updated 11 years ago
- Implementation of the DeepVesselNet deep learning network☆155Jul 7, 2023Updated 2 years ago
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 2 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27May 20, 2026Updated last week
- MATLAB implementation of '2D and 3D Vascular Structures Enhancement via Multiscale Fractional Anisotropy Tensor (MFAT)'☆20Sep 17, 2018Updated 7 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆26Feb 24, 2026Updated 3 months ago
- ☆12Updated this week
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆31Jul 19, 2021Updated 4 years ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆57Apr 23, 2026Updated last month
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆36May 19, 2026Updated last week
- ☆13Feb 4, 2020Updated 6 years ago
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithm☆12Apr 9, 2021Updated 5 years ago
- Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.☆45May 5, 2026Updated 3 weeks ago
- WebGL-based viewer for volumetric data☆25May 18, 2026Updated last week
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 3 weeks ago
- A curve skeletonization method for elongated objects that may be noisy, IEEE WACV paper, Aug. 2018 update.☆11Apr 15, 2024Updated 2 years ago
- This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", …☆85Feb 19, 2024Updated 2 years ago
- An ITK module to compute 3D thickness☆43Apr 23, 2026Updated last month
- patches for Dirk-Jan Kroon's Fast Marching Matlab Toolbox☆11Nov 12, 2014Updated 11 years ago
- ☆35Sep 17, 2019Updated 6 years ago
- 🌈☆69Oct 10, 2025Updated 7 months ago