Alternatives and similar repositories for fastmorph:

Users that are interested in fastmorph are comparing it to the libraries listed below

• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆13Updated last year
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆45Updated this week
• seung-lab / skeletonization
  Python TEASAR Skeletonization for Sparse Labels
  ☆9Updated last year
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆14Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆50Updated 3 weeks ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated this week
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week
• CAVEconnectome / MeshParty
  ☆35Updated 2 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 6 months ago
• CAVEconnectome / nglui
  ☆10Updated this week
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated 3 weeks ago
• seung-lab / chunkflow
  Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
  ☆51Updated 2 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated this week
• theia-dev / Qiber3D
  Automated quantification of fibrous networks
  ☆11Updated 7 months ago
• funkelab / lsd
  🌈
  ☆53Updated last year
• ilastik / nature_methods_multicut_pipeline
  ☆19Updated 3 years ago
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆21Updated last month
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆19Updated 2 months ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆19Updated last year
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆143Updated last week
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆9Updated 2 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• haesleinhuepf / napari-assistant
  ☆24Updated last month
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆49Updated last month
• JaneliaSciComp / JaneliaDataStandards
  A pilot experiment to dissminate information about Janelia's biomaging data formats.
  ☆11Updated this week
• janelia-flyem / flypylib
  flyem python library for synapse/object detection
  ☆7Updated 6 years ago
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆12Updated 5 years ago