Alternatives and similar repositories for fastmorph:

Users that are interested in fastmorph are comparing it to the libraries listed below

• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆13Updated last year
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆47Updated last week
• seung-lab / skeletonization
  Python TEASAR Skeletonization for Sparse Labels
  ☆9Updated last year
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated last month
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated 8 months ago
• theia-dev / Qiber3D
  Automated quantification of fibrous networks
  ☆11Updated last month
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated this week
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated last week
• CAVEconnectome / MeshParty
  ☆36Updated this week
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆21Updated 4 months ago
• CAVEconnectome / nglui
  ☆11Updated this week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 3 weeks ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆9Updated this week
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• jhuapl-boss / intern
  Python SDK for interacting with the BossDB REST API
  ☆21Updated last month
• seung-lab / microviewer
  Multiplatform 3D numpy image browser based viewer with voxel painting.
  ☆13Updated this week
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆146Updated 3 weeks ago
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆9Updated 3 years ago
• funkelab / lsd
  🌈
  ☆54Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated this week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated last week
• MIDA-group / inspire
  INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
  ☆11Updated 3 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated this week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated this week