seung-lab / fastmorph
Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
☆13Updated last week
Alternatives and similar repositories for fastmorph:
Users that are interested in fastmorph are comparing it to the libraries listed below
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- Command line tool for registration of very large 3D volumes.☆13Updated last year
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆146Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- Automated quantification of fibrous networks☆11Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated this week
- WebGL-based viewer for volumetric data☆23Updated 2 weeks ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last week
- ☆36Updated 3 weeks ago
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆54Updated this week
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated 2 weeks ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆62Updated last month
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆13Updated 3 weeks ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆12Updated last week
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…☆5Updated 3 months ago
- 🌈☆54Updated 3 weeks ago
- Distributed segmentation for bio-image-analysis☆37Updated 2 weeks ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 3 weeks ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 10 months ago
- Python SDK for interacting with the BossDB REST API☆21Updated last week
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated 3 weeks ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 6 years ago
- 3D segmention tool☆13Updated 2 years ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆79Updated 3 months ago
- Pipeline for putting surface meshes into correspondence☆26Updated 2 years ago