Alternatives and similar repositories for corgie:

Users that are interested in corgie are comparing it to the libraries listed below

• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.
  ☆13Updated this week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆15Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆51Updated last week
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆19Updated 3 months ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated last year
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆29Updated 2 weeks ago
• CAVEconnectome / MeshParty
  ☆36Updated this week
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated last month
• funkelab / lsd
  🌈
  ☆54Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 7 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated 3 weeks ago
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆9Updated 3 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• jo-mueller / Slice2Volume
  Script that registers Histology slices to volumetric image data
  ☆11Updated last year
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated this week
• seung-lab / skeletonization
  Python TEASAR Skeletonization for Sparse Labels
  ☆9Updated last year
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆12Updated 5 years ago
• brisvag / napari-label-interpolator
  ☆11Updated last year
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆9Updated last month
• CAVEconnectome / nglui
  ☆10Updated 3 weeks ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆46Updated this week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• uhlmanngroup / muMatch
  Pipeline for putting surface meshes into correspondence
  ☆26Updated 2 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated last year
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆23Updated last year
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆26Updated this week
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated 9 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 3 years ago