neuroscales / nifti-zarrLinks
A draft specification for the nifti-zarr format
☆16Updated last month
Alternatives and similar repositories for nifti-zarr
Users that are interested in nifti-zarr are comparing it to the libraries listed below
Sorting:
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated last year
- GPU-based 3D non-rigid volumetric registration☆41Updated 4 months ago
- Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.☆27Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆27Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated this week
- ☆19Updated 3 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆63Updated last month
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- Tools for distributed alignment of massive images☆91Updated 3 weeks ago
- Specification for the bioimage.io model description file.☆21Updated this week
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆17Updated last month
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Segmentation of anatomical structures in a common coordinate space☆35Updated this week
- Python image segmentation plugin☆31Updated 4 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- High quality visualization for volumetric image data☆54Updated this week
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Updated last month
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- Brain flatmaps generation☆11Updated 3 years ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Index BIDS datasets fast, locally or in the cloud☆21Updated last month
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ☆37Updated last month
- A napari plugin for itk-elastix☆39Updated 3 weeks ago