neuroscales / nifti-zarrLinks
A draft specification for the nifti-zarr format
☆16Updated 5 months ago
Alternatives and similar repositories for nifti-zarr
Users that are interested in nifti-zarr are comparing it to the libraries listed below
Sorting:
- GPU-based 3D non-rigid volumetric registration☆41Updated 3 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 2 weeks ago
- Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.☆26Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆49Updated this week
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated 10 months ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆14Updated 2 weeks ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆53Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆17Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 months ago
- ☆50Updated this week
- ☆30Updated 4 months ago
- Interface to the Bioformats Java library☆13Updated 2 months ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 6 months ago
- Python image segmentation plugin☆31Updated 4 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆36Updated this week
- Tools for distributed alignment of massive images☆86Updated this week
- Specification for the bioimage.io model description file.☆21Updated this week
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆80Updated 2 weeks ago
- A napari plugin for itk-elastix☆39Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- A stable diffusion demo for napari☆11Updated last year
- A minimal Python package for reading and validating OME-Zarr (meta)data☆33Updated this week
- Loading and saving of image data.☆10Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Brain flatmaps generation☆11Updated 2 years ago