Alternatives and similar repositories for nifti-zarr

Users that are interested in nifti-zarr are comparing it to the libraries listed below

• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆41Updated 2 months ago
• InsightSoftwareConsortium / GetYourBrainTogether
  Get Your Brain Together Neuroimage Registration Workshops and Hackathons
  ☆21Updated 11 months ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated 3 weeks ago
• ntustison / ANTsXMouseBrainMapping
  The ANTsX Ecosystem for Mapping the Mouse Brain
  ☆14Updated this week
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆53Updated this week
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆14Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆55Updated last week
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆23Updated 3 weeks ago
• AllenInstitute / biofile-finder
  An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…
  ☆15Updated this week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆87Updated last month
• scalableminds / webknossos-libs
  Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
  ☆26Updated last week
• b-heifets / UNRAVEL
  UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images
  ☆13Updated this week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 7 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last week
• haesleinhuepf / napari-assistant
  ☆33Updated 6 months ago
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆21Updated this week
• int-brain-lab / atlas
  Brain flatmaps generation
  ☆11Updated 3 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated this week
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆81Updated this week
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆20Updated last month
• chanzuckerberg / napari-plugin-alfa-cohort
  Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration
  ☆11Updated 4 years ago
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆17Updated 2 years ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 11 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• PolusAI / bfio
  Interface to the Bioformats Java library
  ☆13Updated 3 months ago
• allen-cell-animated / agave
  ☆52Updated this week
• CAVEconnectome / nglui
  ☆12Updated 2 months ago
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆13Updated 3 weeks ago