neuroscales / nifti-zarrLinks
A draft specification for the nifti-zarr format
☆16Updated 7 months ago
Alternatives and similar repositories for nifti-zarr
Users that are interested in nifti-zarr are comparing it to the libraries listed below
Sorting:
- GPU-based 3D non-rigid volumetric registration☆41Updated 2 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 2 weeks ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated last year
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- ☆33Updated 6 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.☆27Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated last month
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Updated this week
- Registration to BrainGlobe atlases in napari using Elastix☆24Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 8 months ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Specification for the bioimage.io model description file.☆21Updated this week
- GPU-accelerated Image Processing library for Python☆51Updated this week
- A napari plugin for counting organoids from brightfield microscopy images with deep learning☆13Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- A template repo used to make new napari plugins☆28Updated this week
- Python image segmentation plugin☆31Updated 4 years ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- ☆49Updated last week
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- High quality visualization for volumetric image data☆52Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- A 3D interactivity toolbox for napari☆37Updated 4 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 4 months ago
- Brain flatmaps generation☆11Updated 3 years ago