PytorchConnectomics / pytorch_connectomicsLinks
PyTorch Connectomics: segmentation toolbox for EM connectomics
β184Updated this week
Alternatives and similar repositories for pytorch_connectomics
Users that are interested in pytorch_connectomics are comparing it to the libraries listed below
Sorting:
- πβ66Updated last month
- A curated list of resources for 3D segmentation of neurites in EM imagesβ55Updated last year
- Python scripts to read and write the CREMI hdf5 file format.β39Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.β26Updated 2 months ago
- β22Updated 4 years ago
- Deep Learning for EM Connectomicsβ16Updated 3 years ago
- Accepted by ISBI 2022 (Oral)β39Updated 3 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for β¦β39Updated 2 weeks ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Developmentβ32Updated 2 years ago
- The mutex watershed for image segmentation.β67Updated 4 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.β29Updated 2 years ago
- π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumesβ52Updated last year
- official implementation of the PatchPerPix instance segmentation methodβ34Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Imagesβ126Updated last year
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentationβ17Updated 2 months ago
- β203Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeveβ¦β22Updated 2 years ago
- β242Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β71Updated 3 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.β110Updated 3 weeks ago
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomeβ¦β169Updated 2 years ago
- β102Updated 2 months ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxesβ85Updated 6 years ago
- β29Updated last year
- Code for the NeurIPS 2019 paper: Topology-Preserving Deep Image Segmentationβ175Updated 2 years ago
- β92Updated 6 months ago
- Instance segmentation via deep pixel embeddingβ23Updated 5 years ago
- This code was submitted to Cell Tracking Challenge, ISBI 2020.β14Updated 4 years ago
- StarDist PyTorchβ47Updated 3 years ago