PyTorch Connectomics: segmentation toolbox for EM connectomics
☆196Jul 15, 2026Updated this week
Alternatives and similar repositories for pytorch_connectomics
Users that are interested in pytorch_connectomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🌈☆70Oct 10, 2025Updated 9 months ago
- A curated list of resources for 3D segmentation of neurites in EM images☆58Mar 11, 2024Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated last month
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆24Jul 14, 2026Updated last week
- Flood-Filling Networks for instance segmentation in 3d volumes.☆349Updated this week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Updated this week
- Read and write Neuroglancer datasets programmatically.☆174Updated this week
- toolbox utility functions☆10Jun 8, 2026Updated last month
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated 3 months ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Nov 13, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆27Feb 24, 2026Updated 4 months ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- Accepted by ISBI 2022 (Oral)☆39Apr 9, 2022Updated 4 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆26Dec 26, 2022Updated 3 years ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers☆14Apr 17, 2023Updated 3 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 2 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆127Updated this week
- ☆17Feb 3, 2018Updated 8 years ago
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 3 years ago
- ☆22Jan 6, 2026Updated 6 months ago
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated 2 weeks ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 2 months ago
- Domain Adaptive Mitochondria Segmentation via Enforcing Inter-Section Consistency☆16Jul 16, 2023Updated 3 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Updated this week
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 10 months ago
- ☆61Jul 8, 2026Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆91Jul 6, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation☆18Sep 10, 2025Updated 10 months ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- WebGL-based viewer for volumetric data☆1,342Updated this week
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated last year
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated last year
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentation☆13Jul 16, 2023Updated 3 years ago