Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Model" (MICCAI 2024)
☆24Jul 14, 2026Updated 3 weeks ago
Alternatives and similar repositories for SegNeuron
Users that are interested in SegNeuron are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Nov 13, 2024Updated last year
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆13May 15, 2023Updated 3 years ago
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning☆32May 28, 2022Updated 4 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆27Feb 24, 2026Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- 🌈☆70Oct 10, 2025Updated 10 months ago
- ☆62Updated this week
- Neurotransmitter prediction from EM.☆17Feb 28, 2025Updated last year
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆199Updated this week
- Official PyTorch code for Learning Large-Factor EM Image Super-Resolution with Generative Priors (GPEMSR, CVPR2024)☆15Aug 24, 2025Updated 11 months ago
- Read and write Neuroglancer datasets programmatically.☆175Aug 4, 2026Updated last week
- A curated list of resources for 3D segmentation of neurites in EM images☆58Mar 11, 2024Updated 2 years ago
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated last month
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆18Apr 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆53Jul 12, 2024Updated 2 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Jul 14, 2026Updated 3 weeks ago
- ☆11Jun 11, 2020Updated 6 years ago
- ☆33Updated this week
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers☆14Apr 17, 2023Updated 3 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Jul 30, 2026Updated last week
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 6 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆70Aug 1, 2026Updated last week
- [MICCAI 2024] Swin SMT: Global Sequential Modeling for Enhancing 3D Medical Image Segmentation☆29Oct 10, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- official implementation of the PatchPerPix instance segmentation method☆35Jun 27, 2023Updated 3 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆96Updated this week
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 11 months ago
- Code for Modeling Annotator Preference and Stochastic Annotation Error for Medical Image Segmentation (MedIA 2023).☆10Nov 17, 2023Updated 2 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆349Jul 14, 2026Updated 3 weeks ago
- A complete, MATLAB-based spike-sorting package for extracellular electrode/tetrode recordings☆11Oct 16, 2018Updated 7 years ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Jul 23, 2023Updated 3 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆30Dec 30, 2022Updated 3 years ago
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated last month
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Feb 4, 2019Updated 7 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 3 months ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 3 months ago
- Some basic topics in the field of deep learning, including papers, notes and codes, etc., hope to be helpful to later people.☆20Jun 12, 2024Updated 2 years ago
- official code for UniSAL☆18Mar 19, 2025Updated last year
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago