Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Model" (MICCAI 2024)
☆19Jan 22, 2026Updated last month
Alternatives and similar repositories for SegNeuron
Users that are interested in SegNeuron are comparing it to the libraries listed below
Sorting:
- Open source volume electron microscopy (vEM) datasets for connectomics.☆15Nov 13, 2024Updated last year
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆12May 15, 2023Updated 2 years ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆13Jul 27, 2025Updated 7 months ago
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆16Apr 5, 2024Updated last year
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning☆32May 28, 2022Updated 3 years ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers☆14Apr 17, 2023Updated 2 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Oct 22, 2025Updated 4 months ago
- [MICCAI 2024] Swin SMT: Global Sequential Modeling for Enhancing 3D Medical Image Segmentation☆24Oct 10, 2024Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆62Dec 16, 2025Updated 2 months ago
- 1、volley 项目地址 https://github.com/smanikandan14/Volley-demo (1) JSON,图像等的异步下载; (2) 网络请求的排序(scheduling) (3) 网络请求的优先级处理 (4) 缓存 (5…☆10Jun 20, 2017Updated 8 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆345Updated this week
- awesome-topology-driven-deep-image-analysis☆50Oct 3, 2025Updated 4 months ago
- ☆11Jun 11, 2020Updated 5 years ago
- A complete, MATLAB-based spike-sorting package for extracellular electrode/tetrode recordings☆11Oct 16, 2018Updated 7 years ago
- ☆11Jan 5, 2023Updated 3 years ago
- Image augmentation for machine learning experiments.☆18Feb 3, 2026Updated last month
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 6 months ago
- 计算机基础知识总结☆11Mar 16, 2017Updated 8 years ago
- A difficulty-aware embedding of complementary deep networks for image classification☆13Jul 25, 2024Updated last year
- VAP-Diffusion: Enriching Descriptions with MLLMs for Enhanced Medical Image Generation☆12May 22, 2025Updated 9 months ago
- Code for Modeling Annotator Preference and Stochastic Annotation Error for Medical Image Segmentation (MedIA 2023).☆11Nov 17, 2023Updated 2 years ago
- [ICLR 2026] RefAny3D: 3D Asset-Referenced Diffusion Models for Image Generation☆30Feb 5, 2026Updated 3 weeks ago
- use matconvnet to train my own image classification☆10Oct 21, 2016Updated 9 years ago
- ☆13Nov 18, 2025Updated 3 months ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Feb 2, 2026Updated last month
- CC4S: Encouraging Certainty and Consistency in Scribble-Supervised Semantic Segmentation☆13Dec 27, 2024Updated last year
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated last year
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Nov 19, 2025Updated 3 months ago
- Official Implementation of the topograph method for topology-preserving image segmentation.☆22Oct 2, 2024Updated last year
- Handeye calibration using ICP method in UR robot☆15Feb 15, 2025Updated last year
- 3DSlicer plugin for inpainting lung nodules in 3D chest CT data.☆11Dec 2, 2024Updated last year
- [Communications Medicine' 25 (Nature Portfolio) ] Tuning Vision Foundation Models for Rectal Cancer Segmentation from CT Scans☆13Jul 11, 2025Updated 7 months ago
- Code for "PartSDF: Part-Based Implicit Neural Representation for Composite 3D Shape Parametrization and Optimization"☆21Feb 24, 2026Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 5 months ago
- ☆52Jul 12, 2024Updated last year
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆15Feb 16, 2026Updated 2 weeks ago
- [ECCV 2024] SparseRefine: Sparse Refinement for Efficient High-Resolution Semantic Segmentation☆14Jan 10, 2025Updated last year
- Matlab implementation of several methods for cell detection and cell segmentation☆16Jun 26, 2020Updated 5 years ago