Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Model" (MICCAI 2024)
☆21Mar 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for SegNeuron
Users that are interested in SegNeuron are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official PyTorch code for Learning Large-Factor EM Image Super-Resolution with Generative Priors (GPEMSR, CVPR2024)☆15Aug 24, 2025Updated 7 months ago
- ☆52Apr 3, 2026Updated last week
- A curated list of resources for 3D segmentation of neurites in EM images☆57Mar 11, 2024Updated 2 years ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆13May 15, 2023Updated 2 years ago
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning☆32May 28, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆13Mar 16, 2026Updated 3 weeks ago
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆17Apr 5, 2024Updated 2 years ago
- [MICCAI 2024] Swin SMT: Global Sequential Modeling for Enhancing 3D Medical Image Segmentation☆24Oct 10, 2024Updated last year
- 🌈☆67Oct 10, 2025Updated 6 months ago
- ☆11Jun 11, 2020Updated 5 years ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers☆14Apr 17, 2023Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆191Mar 31, 2026Updated last week
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆345Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Read and write Neuroglancer datasets programmatically.☆171Mar 31, 2026Updated last week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆67Mar 17, 2026Updated 3 weeks ago
- Code for Modeling Annotator Preference and Stochastic Annotation Error for Medical Image Segmentation (MedIA 2023).☆11Nov 17, 2023Updated 2 years ago
- official implementation of the PatchPerPix instance segmentation method☆35Jun 27, 2023Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆64Updated this week
- Multi-Object Tracking with Integer Linear Equations☆38Mar 30, 2026Updated 2 weeks ago
- Image augmentation for machine learning experiments.☆20Feb 3, 2026Updated 2 months ago
- A complete, MATLAB-based spike-sorting package for extracellular electrode/tetrode recordings☆11Oct 16, 2018Updated 7 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Dec 30, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Simple watershed and agglomeration library for affinity graphs.☆29Sep 18, 2025Updated 6 months ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated last month
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated last year
- VAP-Diffusion: Enriching Descriptions with MLLMs for Enhanced Medical Image Generation☆12Updated this week
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Feb 4, 2019Updated 7 years ago
- ☆10Apr 5, 2019Updated 7 years ago
- [ICLR 2026] RefAny3D: 3D Asset-Referenced Diffusion Models for Image Generation☆32Mar 10, 2026Updated last month
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- Accepted by ISBI 2022 (Oral)☆39Apr 9, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆50Jan 6, 2023Updated 3 years ago
- This is a new version of Learning Active Learning which uses reinforcement learning☆13May 17, 2022Updated 3 years ago
- Programmable automated machine learning - proof of concept☆15Oct 9, 2024Updated last year
- A collection of metric learning papers.☆20Apr 24, 2023Updated 2 years ago
- Segment Anything for Microscopy☆671Updated this week
- ☆21Mar 6, 2025Updated last year
- A difficulty-aware embedding of complementary deep networks for image classification☆13Jul 25, 2024Updated last year