Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Model" (MICCAI 2024)
β24Sep 16, 2026Updated last month
Alternatives and similar repositories for SegNeuron
Users that are interested in SegNeuron are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- πβ70Oct 10, 2025Updated last year
- Open source volume electron microscopy (vEM) datasets for connectomics.β19Oct 4, 2026Updated 3 weeks ago
- A contrastive learning framework for 3D electron microscopy dataβ13Jan 17, 2023Updated 3 years ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolysoβ¦β14May 15, 2023Updated 3 years ago
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learningβ32May 28, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ202Updated this week
- Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentationβ14Jul 16, 2023Updated 3 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challengeβ15Feb 28, 2018Updated 8 years ago
- Simple watershed and agglomeration library for affinity graphs.β31Oct 6, 2026Updated 3 weeks ago
- Neurotransmitter prediction from EM.β17Feb 28, 2025Updated last year
- β68Oct 20, 2026Updated last week
- β13Sep 28, 2025Updated last year
- SEAMLeSS (under active development)β11Aug 23, 2021Updated 5 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics dataβ29Updated this week
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Utility functions for large-scale bio-image analysis.β64Jul 1, 2026Updated 3 months ago
- β53Jul 12, 2024Updated 2 years ago
- Read and write Neuroglancer datasets programmatically.β176Updated this week
- Command line tool for registration of very large 3D volumes.β16Jan 28, 2026Updated 9 months ago
- Utilities for working with FIB-SEM data (Extract/analyze data, register FIB-SEM stacks, analyze noise etc.)β14Sep 18, 2026Updated last month
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.β69Updated this week
- β11Jun 11, 2020Updated 6 years ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformersβ14Apr 17, 2023Updated 3 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.β19Updated this week
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- β40Updated this week
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"β18Apr 5, 2024Updated 2 years ago
- Example data and commands for exploring NeuroProofβ10Mar 7, 2016Updated 10 years ago
- Automated Segmentation of cellular substructures in Electron Microscopyβ18Jan 28, 2026Updated 9 months ago
- Shared repo for EM connectomics and Array Tomography render based image processing modulesβ18Oct 13, 2026Updated 2 weeks ago
- Tools for handling FIB-SEM data and annotationsβ21Apr 4, 2025Updated last year
- This is an official implementation of the CVPR2022 paper "Blind2Unblind: Self-Supervised Image Denoising with Visible Blind Spots".β143May 8, 2023Updated 3 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.β129Updated this week
- Neuronal recordings and Foundation modelsβ14Jan 8, 2026Updated 9 months ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- [MICCAI 2024] Swin SMT: Global Sequential Modeling for Enhancing 3D Medical Image Segmentationβ29Oct 10, 2024Updated 2 years ago
- Google Colab notebook for Cellposeβ11Aug 21, 2025Updated last year
- A universal fluorescence microscopic image restoration algorithmβ11Jan 29, 2026Updated 9 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasetsβ27Feb 17, 2025Updated last year
- A complete, MATLAB-based spike-sorting package for extracellular electrode/tetrode recordingsβ11Oct 16, 2018Updated 8 years ago
- β13Oct 9, 2024Updated 2 years ago
- Scalable Optical Flow-based Image Montaging and Alignmentβ103Oct 5, 2026Updated 3 weeks ago