seung-lab / fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
☆54Updated this week
Alternatives and similar repositories for fastremap
Users that are interested in fastremap are comparing it to the libraries listed below
Sorting:
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆48Updated 2 weeks ago
- Block-wise task scheduling for large nD volumes.☆30Updated last month
- A library to facilitate machine learning on multi-dimensional images.☆82Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆70Updated this week
- Read and write Neuroglancer datasets programmatically.☆146Updated last week
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆15Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 3 months ago
- GPU-accelerated Image Processing library for Python☆41Updated 2 weeks ago
- ☆41Updated this week
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated last month
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆37Updated this week
- ☆24Updated last week
- WebGL-based viewer for volumetric data☆23Updated this week
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 3 weeks ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆51Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated last week
- serve Zarr datasets via HTTP☆28Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆35Updated this week
- Pydantic models for OME-NGFF☆23Updated last week
- A 3D interactivity toolbox for napari☆34Updated 3 weeks ago
- Linking napari layers with Matplotlib plots☆40Updated last week
- ☆12Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated this week
- Python image segmentation plugin☆31Updated 4 years ago
- python tools for BigDataViewer☆22Updated 4 months ago
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Updated 3 years ago
- ☆36Updated last month