seung-lab / fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
☆54Updated 4 months ago
Alternatives and similar repositories for fastremap:
Users that are interested in fastremap are comparing it to the libraries listed below
- A library to facilitate machine learning on multi-dimensional images.☆82Updated last week
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- Block-wise task scheduling for large nD volumes.☆30Updated 3 weeks ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆13Updated last month
- Read and write Neuroglancer datasets programmatically.☆146Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆67Updated this week
- GPU-accelerated Image Processing library for Python☆40Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated 3 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated 2 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated this week
- serve Zarr datasets via HTTP☆28Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 2 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last week
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated this week
- ☆24Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- Python image segmentation plugin☆31Updated 4 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆68Updated 2 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated 3 weeks ago
- ☆41Updated this week
- Pydantic models for OME-NGFF☆23Updated last week
- ☆22Updated last year
- A 3D interactivity toolbox for napari☆34Updated 4 months ago
- python tools for BigDataViewer☆22Updated 3 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- GPU accelerated 3D image deconvolution using CUDA☆35Updated 9 months ago
- ilastik plugin for napari☆14Updated last year
- my first baby steps with Napari☆10Updated 5 years ago
- A fully scalable robust image feature extraction library.☆24Updated 2 weeks ago