Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
☆65Apr 28, 2026Updated 3 weeks ago
Alternatives and similar repositories for fastremap
Users that are interested in fastremap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated last month
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 2 months ago
- Fill holes in binary 2D & 3D images fast.☆29Apr 29, 2026Updated 3 weeks ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated last month
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆67May 16, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated 11 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27May 20, 2026Updated last week
- Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.☆45May 5, 2026Updated 3 weeks ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆202May 18, 2026Updated last week
- Read and write Neuroglancer datasets programmatically.☆173Apr 24, 2026Updated last month
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆36May 19, 2026Updated last week
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆72May 18, 2026Updated last week
- WebGL-based viewer for volumetric data☆25May 18, 2026Updated last week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Apr 24, 2026Updated last month
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆265Mar 18, 2026Updated 2 months ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- ☆10Updated this week
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆86Nov 5, 2025Updated 6 months ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- High quality visualization for volumetric image data☆61Updated this week
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- ☆42Sep 1, 2025Updated 8 months ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆452May 5, 2026Updated 3 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 2 weeks ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 2 weeks ago
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆42Aug 23, 2024Updated last year
- ☆13Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26May 16, 2026Updated last week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆45Jul 28, 2025Updated 9 months ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated 11 months ago
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated 3 weeks ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Apr 13, 2026Updated last month