Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
☆65Aug 23, 2026Updated last week
Alternatives and similar repositories for fastremap
Users that are interested in fastremap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Aug 25, 2026Updated last week
- 3D dense segmentation compression codec based on crack codes.☆18Updated this week
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated 2 months ago
- Fill holes in binary 2D & 3D images fast.☆30Apr 29, 2026Updated 4 months ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Aug 25, 2026Updated last week
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆215Jul 24, 2026Updated last month
- Read and write Neuroglancer datasets programmatically.☆175Updated this week
- Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.☆45Aug 28, 2026Updated last week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Aug 9, 2026Updated 3 weeks ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆75Aug 25, 2026Updated last week
- WebGL-based viewer for volumetric data☆25Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 4 months ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 3 weeks ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆269Aug 24, 2026Updated last week
- ☆11Aug 12, 2026Updated 3 weeks ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆89Aug 19, 2026Updated 2 weeks ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆14Sep 7, 2021Updated 4 years ago
- High quality visualization for volumetric image data☆62Updated this week
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Aug 28, 2026Updated last week
- ☆43Sep 1, 2025Updated last year
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆463Aug 25, 2026Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 3 months ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆43Aug 23, 2024Updated 2 years ago