Alternatives and similar repositories for neuroglancer-scripts

Users that are interested in neuroglancer-scripts are comparing it to the libraries listed below

• HumanBrainProject / openMINDS
  openMINDS comprises a set of metadata models for research products in the field of neuroscience.
  ☆43Updated 2 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆138Updated this week
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆161Updated last week
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆81Updated this week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆56Updated 2 weeks ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 7 months ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆39Updated 5 months ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆219Updated this week
• google-research / connectomics
  ☆46Updated 2 weeks ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆164Updated last week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆34Updated this week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆88Updated last month
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆43Updated 3 months ago
• navis-org / navis
  Python library for analysis of neuroanatomical data.
  ☆107Updated 2 weeks ago
• erturklab / delivr_cfos
  End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR
  ☆34Updated last month
• funkelab / lsd
  🌈
  ☆65Updated 3 weeks ago
• openMetadataInitiative / openMINDS_SANDS
  A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.
  ☆13Updated last week
• openMetadataInitiative / openMINDS_core
  The openMINDS core metadata model includes schemas that can be used to describe the general origin, location and content of research prod…
  ☆23Updated 2 months ago
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆17Updated 2 months ago
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆54Updated last week
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated this week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆86Updated last month
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆25Updated this week
• abcucberkeley / PetaKit5D
  ☆48Updated 2 weeks ago
• JaneliaSciComp / awesome-janelia-software
  A curated list of awesome Janelia software
  ☆17Updated 8 months ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆52Updated last week