navis-org / fafbseg-py
Tools to work with the FlyWire connectome. Fully interoperable with navis.
☆13Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for fafbseg-py
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆11Updated 2 months ago
- ☆34Updated last month
- Python library for analysis of neuroanatomical data.☆82Updated 2 weeks ago
- ☆10Updated last week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆24Updated this week
- Python library to interface with CATMAID servers. Fully interoperable with navis.☆24Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆44Updated this week
- WebGL-based viewer for volumetric data☆22Updated this week
- Segmentation of anatomical structures in a common coordinate space☆28Updated this week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆40Updated 4 months ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 3 years ago
- Python client utilties for interacting with the neuPrint connectome analysis service☆31Updated last month
- Block-wise task scheduling for large nD volumes.☆27Updated last week
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆24Updated last year
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆12Updated this week
- ☆35Updated 3 months ago
- Read and write Neuroglancer datasets programmatically.☆135Updated this week
- A lightweight python package to download neuronal morphologies☆17Updated this week
- 3D/4D volumetric rendering of microscopy data☆20Updated 3 weeks ago
- Efficient meta learning of synaptic plasticity from experimental data using artificial neural network models.☆14Updated 2 weeks ago
- Python SDK for interacting with the BossDB REST API☆21Updated last week
- 🌈☆52Updated last year
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated 10 months ago
- Brainways☆14Updated this week
- Napari plugin for working with video files.☆13Updated 3 weeks ago
- Loading and saving of image data.☆10Updated 9 months ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 3 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆54Updated this week