JackieZhai / awesome-vem-datasetsLinks
Open source volume electron microscopy (vEM) datasets for connectomics.
☆15Updated last year
Alternatives and similar repositories for awesome-vem-datasets
Users that are interested in awesome-vem-datasets are comparing it to the libraries listed below
Sorting:
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated this week
- ☆11Updated last year
- Command line tool for registration of very large 3D volumes.☆15Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆59Updated last month
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆15Updated 6 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 3 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆19Updated 5 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆113Updated this week
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…☆104Updated 3 months ago
- Deep Learning for EM Connectomics☆16Updated 3 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆187Updated last month
- 🌈☆67Updated 3 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 9 months ago
- ☆22Updated last week
- Course and exercises on deep learning for microscopy image analysis☆21Updated last month
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆117Updated this week
- Transformer-based cell tracking for live-cell microscopy☆122Updated 3 weeks ago
- A curated list of resources for 3D segmentation of neurites in EM images☆55Updated last year
- 3D shape analysis using deep learning☆28Updated 3 months ago
- Tools for handling FIB-SEM data and annotations☆22Updated 9 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆83Updated last month
- MorphoFeatures code and data☆22Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆40Updated this week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆75Updated 4 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 11 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆26Updated last week
- ☆17Updated 7 years ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆26Updated 2 years ago
- Collection of connectomic papers and datasets.☆16Updated 2 years ago