JackieZhai / awesome-vem-datasetsLinks
Open source volume electron microscopy (vEM) datasets for connectomics.
☆14Updated 8 months ago
Alternatives and similar repositories for awesome-vem-datasets
Users that are interested in awesome-vem-datasets are comparing it to the libraries listed below
Sorting:
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated this week
- ☆10Updated last year
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 8 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated last week
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated last month
- Collection of connectomic papers and datasets.☆15Updated last year
- ☆87Updated last month
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- 🌈☆59Updated 3 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆98Updated last week
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆13Updated 6 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆53Updated last year
- ☆21Updated 4 years ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆94Updated this week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Easy Volumetric Segmentation with Deep Learning☆26Updated last week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆72Updated 3 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆50Updated last year
- Transformer-based cell tracking for live-cell microscopy☆77Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆23Updated 2 months ago
- Joint training of denoising and segmentation.☆74Updated last year
- MorphoFeatures code and data☆21Updated 2 years ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆30Updated 4 months ago
- Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentation☆12Updated 2 years ago
- ☆17Updated 7 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago