Alternatives and similar repositories for awesome-vem-datasets

Users that are interested in awesome-vem-datasets are comparing it to the libraries listed below

• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images
  A curated list of resources for 3D segmentation of neurites in EM images
  ☆52Updated last year
• betaseg / cellsketch
  ☆10Updated last year
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆33Updated last week
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 7 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• Luchixiang / EMDiffuse
  ☆48Updated 11 months ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• Cao-ruijie / Dark-sectioning
  This is the supplementary code for Dark sectioning. And it is private now
  ☆28Updated 2 weeks ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆34Updated 2 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆10Updated last month
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆18Updated last month
• funkelab / lsd
  🌈
  ☆58Updated 2 months ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated 3 months ago
• Levishery / connectomic-paper-datasets
  Collection of connectomic papers and datasets.
  ☆15Updated last year
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆96Updated last week
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated last year
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆74Updated 2 weeks ago
• HenriquesLab / NanoJ-eSRRF
  ☆20Updated last month
• cabooster / SRDTrans
  SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising
  ☆79Updated 10 months ago
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆13Updated 6 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆28Updated 2 years ago
• volume-em / empanada-napari
  Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
  ☆23Updated 2 months ago
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 2 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated last month
• juglab / DecoNoising
  ☆11Updated 4 years ago