YuelongWu / feabas
Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
☆14Updated this week
Alternatives and similar repositories for feabas:
Users that are interested in feabas are comparing it to the libraries listed below
- Utils and convenience functions for large-scale bio-image analysis.☆50Updated 3 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆28Updated 3 weeks ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 3 weeks ago
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆14Updated 2 weeks ago
- Tools for handling FIB-SEM data and annotations☆21Updated 4 months ago
- 3D/4D volumetric rendering of microscopy data☆21Updated last month
- Affinity based segmentation algorithms and tools☆9Updated 2 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆22Updated 5 months ago
- Running compute-intense parts of BigStitcher distributed☆21Updated this week
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆26Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆25Updated 2 months ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.☆13Updated 2 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- Tools for distributed alignment of massive images☆79Updated 2 weeks ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- 1d plotting in napari-based canvas.☆26Updated this week
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated 8 months ago
- A napari plugin to view and edit metadata☆10Updated last year
- ☆24Updated last month
- Optimize image processing workflows in napari☆17Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- ☆22Updated 4 months ago
- ☆10Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 3 weeks ago