YuelongWu / feabasView external linksLinks
Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
☆21Jan 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for feabas
Users that are interested in feabas are comparing it to the libraries listed below
Sorting:
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Oct 22, 2025Updated 3 months ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Feb 2, 2026Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆19Jan 28, 2026Updated 2 weeks ago
- Scalable Optical Flow-based Image Montaging and Alignment☆87Jan 26, 2026Updated 2 weeks ago
- ☆11Nov 24, 2025Updated 2 months ago
- ☆40Sep 1, 2025Updated 5 months ago
- Umbrella package to help install/load nat packages☆11Jul 28, 2021Updated 4 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆32Jan 3, 2025Updated last year
- Read and write Neuroglancer datasets programmatically.☆171Feb 4, 2026Updated last week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆65Jan 17, 2026Updated 3 weeks ago
- Open source volume electron microscopy (vEM) datasets for connectomics.☆15Nov 13, 2024Updated last year
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆17Dec 10, 2025Updated 2 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆22Jan 21, 2026Updated 3 weeks ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆21Jan 23, 2026Updated 3 weeks ago
- ☆16Jan 23, 2024Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆188Updated this week
- ☆28Feb 7, 2026Updated last week
- Python SDK for interacting with the BossDB REST API☆22Apr 18, 2025Updated 9 months ago
- Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.☆27Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Dec 10, 2025Updated 2 months ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- WebGL-based viewer for volumetric data☆24Feb 7, 2026Updated last week
- Python library for analysis of neuroanatomical data.☆108Updated this week
- Simple watershed and agglomeration library for affinity graphs.☆28Sep 18, 2025Updated 4 months ago
- A library to facilitate machine learning on multi-dimensional images.☆88Feb 2, 2026Updated last week
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 2 years ago
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Oct 23, 2019Updated 6 years ago
- Scripts and code relating to building anatomical templates.☆11Jun 10, 2025Updated 8 months ago
- Blender application template simulating degrees of freedom in a focused ion beam system☆10Sep 3, 2021Updated 4 years ago
- Vasculature blood flow computation and impact of astrocytic endfeet on vessels☆11Feb 26, 2025Updated 11 months ago
- ☆39Jul 23, 2024Updated last year
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Jul 28, 2025Updated 6 months ago
- Browser-based GUI HDF Viewer https://broh5.readthedocs.io☆13Dec 26, 2025Updated last month
- ☆12Feb 5, 2026Updated last week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Python implementation of HlibertSort for sorting 3D point clouds using space-filling curves☆11Apr 17, 2019Updated 6 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year