allen-cell-animated / agaveLinks
High quality visualization for volumetric image data
☆54Updated last week
Alternatives and similar repositories for agave
Users that are interested in agave are comparing it to the libraries listed below
Sorting:
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆56Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated last week
- Command-line client for Fractal☆47Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- ☆41Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Updated 2 months ago
- native Python dataclasses for the OME data model☆65Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Browse your OMERO database from within napari.☆40Updated this week
- A napari plugin for clustering objects according to their properties.☆89Updated last week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆48Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 5 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last month
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆152Updated this week
- ☆36Updated last year
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- Cookiecutter for napari plugins☆71Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- ☆49Updated last month
- ☆38Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Updated 5 months ago
- StarDist plugin for napari☆38Updated last year
- Create 3D/4D animations using a natural language-based syntax☆61Updated 7 months ago