Alternatives and similar repositories for agave

Users that are interested in agave are comparing it to the libraries listed below

• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆20Updated 3 months ago
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆55Updated this week
• mobie / mobie-viewer-fiji
  ☆41Updated 2 weeks ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆19Updated 2 months ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆54Updated last month
• jni / affinder
  Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
  ☆22Updated 4 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆25Updated last year
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 4 months ago
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆37Updated 2 weeks ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last month
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆42Updated 2 weeks ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated last week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 9 months ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆71Updated last year
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated 2 weeks ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading, writing and validating OME-Zarr (meta)data
  ☆36Updated last week
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated 3 weeks ago
• e11bio / volara
  Block-wise operations for large nD volumes
  ☆43Updated 2 weeks ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last year
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆52Updated 2 weeks ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 2 months ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆30Updated 3 weeks ago
• morphometrics / morphometrics
  ☆22Updated 2 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 3 weeks ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆59Updated 5 months ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆47Updated last week
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆99Updated last week