A framework for easy application of established machine learning techniques on large, multi-dimensional images.
☆61Apr 24, 2026Updated 4 months ago
Alternatives and similar repositories for dacapo
Users that are interested in dacapo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆43Jul 10, 2026Updated last month
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 3 weeks ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Browse, share, and publish OME-Zarr data☆29Updated this week
- Block-wise operations for large nD volumes☆45Updated this week
- dask empowered fast4dreg☆17Mar 11, 2026Updated 5 months ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 2 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Aug 24, 2026Updated last week
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated 2 months ago
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆45Jun 7, 2026Updated 2 months ago
- A portal for viewing FIB-SEM datasets☆13May 13, 2026Updated 3 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- ☆11Aug 12, 2026Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 11 months ago
- Light microscopy simulation in python.☆55Aug 3, 2026Updated 3 weeks ago
- A library to facilitate machine learning on multi-dimensional images.☆93Aug 3, 2026Updated 3 weeks ago
- A napari plugin to view and edit layer metadata☆13Aug 25, 2026Updated last week
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accurate and efficient spot detection for microscopy data☆141Jun 8, 2026Updated 2 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 8 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 3 years ago
- Block-wise task scheduling for large nD volumes.☆33Aug 24, 2026Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆72Updated this week
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Aug 23, 2026Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GPU-accelerated Image Processing library for Python☆65Aug 20, 2026Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Jun 16, 2026Updated 2 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆55Updated this week
- An introduction to OME-Zarr for big bioimaging data☆28Updated this week
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- ☆23May 1, 2025Updated last year
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated last month