A framework for easy application of established machine learning techniques on large, multi-dimensional images.
☆60Sep 15, 2025Updated 5 months ago
Alternatives and similar repositories for dacapo
Users that are interested in dacapo are comparing it to the libraries listed below
Sorting:
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 10 months ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆42Feb 24, 2026Updated last week
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- dask empowered fast4dreg☆15Feb 20, 2026Updated last week
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆62Dec 16, 2025Updated 2 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆49Updated this week
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆89Feb 17, 2026Updated 2 weeks ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Feb 23, 2026Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆20Jul 15, 2025Updated 7 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Feb 7, 2026Updated 3 weeks ago
- Block-wise task scheduling for large nD volumes.☆33Mar 28, 2025Updated 11 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 2 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated 3 weeks ago
- A napari plugin to view and edit metadata☆13Updated this week
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 7 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆44Feb 23, 2026Updated last week
- Teaching materials for improving research software writing abilities.☆13Dec 1, 2025Updated 3 months ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆66Updated this week
- A fully scalable robust image feature extraction library.☆28Feb 14, 2026Updated 2 weeks ago
- A portal for viewing FIB-SEM datasets☆13Updated this week
- A napari plugin to analysis point spread functions.☆12Mar 28, 2025Updated 11 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- ☆13Nov 24, 2025Updated 3 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 9 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- widget for PSF simulation with aberrations☆25Oct 31, 2023Updated 2 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆117Feb 23, 2026Updated last week