saalfeldlab / n5
Not HDF5
☆177Updated last week
Alternatives and similar repositories for n5:
Users that are interested in n5 are comparing it to the libraries listed below
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆119Updated last week
- Distributed image processing☆219Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆67Updated this week
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆93Updated 3 weeks ago
- A minimal Zarr image viewer based on Viv.☆145Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆183Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 2 months ago
- scalable multiscale image pyramids in python☆27Updated 8 months ago
- The RPC library used in ImJoy.☆24Updated 8 months ago
- Pydantic models for OME-NGFF☆23Updated this week
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆54Updated 4 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆132Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆82Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated last week
- serve Zarr datasets via HTTP☆28Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆11Updated 2 months ago
- A 3D interactivity toolbox for napari☆34Updated 4 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆149Updated this week
- ☆40Updated 8 months ago
- native Python dataclasses for the OME data model☆56Updated last week
- Zarr filesystem backend for N5☆16Updated last week
- Scientific colormaps for python, with only numpy dependency☆109Updated this week
- Block-wise task scheduling for large nD volumes.☆30Updated 2 weeks ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- ☆33Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last month
- Discover, install, and share napari plugins☆51Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- Scalable array processing with bounded memory☆153Updated 2 weeks ago