Alternatives and similar repositories for n5

Users that are interested in n5 are comparing it to the libraries listed below

• constantinpape / z5
  Lightweight C++ and Python interface for datasets in zarr and N5 format
  ☆130Updated last month
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆181Updated last week
• zarr-developers / zarr-specs
  Zarr core protocol for storage and retrieval of N-dimensional typed arrays
  ☆103Updated 4 months ago
• dask / dask-image
  Distributed image processing
  ☆224Updated 2 months ago
• bcdev / jzarr
  A Java implementation of the API offered by the Python zarr package
  ☆35Updated 2 weeks ago
• imjoy-team / imjoy-rpc
  The RPC library used in ImJoy.
  ☆25Updated last year
• JaneliaSciComp / xarray-multiscale
  scalable multiscale image pyramids in python
  ☆29Updated last year
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆88Updated this week
• zarr-developers / zarr_implementations
  ☆42Updated last year
• TheJacksonLaboratory / zarrdataset
  A dataset for loading zarr files to be used in machine learning training pipelines
  ☆34Updated last month
• saalfeldlab / n5-zarr
  Zarr filesystem backend for N5
  ☆19Updated 3 weeks ago
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆224Updated this week
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆153Updated this week
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated 4 months ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆87Updated last week
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆31Updated last year
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆63Updated 2 months ago
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆31Updated this week
• constantinpape / heimdall
  Python based viewer for large mulit-dimensional datasets.
  ☆20Updated 6 years ago
• manzt / simple-zarr-server
  serve Zarr datasets via HTTP
  ☆31Updated 2 years ago
• zarrs / zarrs-python
  A CodecPipeline for zarr-python backed by the zarrs Rust crate
  ☆61Updated this week
• scalableminds / zarrita
  ☆20Updated 2 months ago
• xtensor-stack / xtensor-zarr
  Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.
  ☆47Updated 3 years ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆55Updated 2 months ago
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆21Updated last month
• pyapp-kit / cmap
  Scientific colormaps for python, with only numpy dependency
  ☆161Updated last week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 7 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 11 months ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated last week