Alternatives and similar repositories for n5

Users that are interested in n5 are comparing it to the libraries listed below

• constantinpape / z5
  Lightweight C++ and Python interface for datasets in zarr and N5 format
  ☆118Updated last month
• zarr-developers / zarr-specs
  Zarr core protocol for storage and retrieval of N-dimensional typed arrays
  ☆94Updated last week
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆79Updated 2 weeks ago
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆153Updated 3 weeks ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆42Updated 4 months ago
• dask / dask-image
  Distributed image processing
  ☆220Updated last month
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆199Updated this week
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆58Updated this week
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆134Updated last month
• zarr-developers / zarr_implementations
  ☆41Updated 11 months ago
• manzt / simple-zarr-server
  serve Zarr datasets via HTTP
  ☆28Updated 2 years ago
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated this week
• TheJacksonLaboratory / zarrdataset
  A dataset for loading zarr files to be used in machine learning training pipelines
  ☆33Updated 3 weeks ago
• JaneliaSciComp / xarray-multiscale
  scalable multiscale image pyramids in python
  ☆28Updated 11 months ago
• zarrs / zarrs-python
  A CodecPipeline for zarr-python backed by zarrs (Rust)
  ☆36Updated this week
• imjoy-team / imjoy-rpc
  The RPC library used in ImJoy.
  ☆24Updated 11 months ago
• vispy / jupyter_rfb
  Remote Frame Buffer for Jupyter
  ☆77Updated last month
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆42Updated this week
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆38Updated this week
• bcdev / jzarr
  A Java implementation of the API offered by the Python zarr package
  ☆32Updated last month
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆35Updated 2 months ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆154Updated last week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated 3 weeks ago
• PolusAI / nyxus
  A fully scalable robust image feature extraction library.
  ☆24Updated 2 weeks ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 3 months ago
• xtensor-stack / xtensor-zarr
  Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.
  ☆45Updated 3 years ago
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆30Updated last year
• scalableminds / zarrita
  ☆19Updated 8 months ago
• allen-cell-animated / agave
  ☆43Updated this week
• zarr-developers / pydantic-zarr
  Pydantic models for Zarr
  ☆32Updated 2 weeks ago