seung-lab / microviewer
Multiplatform 3D numpy image browser based viewer with voxel painting.
☆13Updated this week
Alternatives and similar repositories for microviewer:
Users that are interested in microviewer are comparing it to the libraries listed below
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.☆13Updated this week
- ☆36Updated this week
- Command line tool for registration of very large 3D volumes.☆13Updated last year
- ☆11Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆46Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆15Updated this week
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆9Updated last month
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆52Updated 2 months ago
- Distributed segmentation for bio-image-analysis☆36Updated 7 months ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆25Updated this week
- Read and write Neuroglancer datasets programmatically.☆144Updated this week
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆51Updated 2 months ago
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆27Updated last month
- WebGL-based viewer for volumetric data☆23Updated this week
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆51Updated last week
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆145Updated last month
- Scalable Optical Flow-based Image Montaging and Alignment☆59Updated this week
- A curated list of resources for 3D segmentation of neurites in EM images☆48Updated 11 months ago
- 🌈☆54Updated last year
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆79Updated last month
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆62Updated 2 months ago
- ☆10Updated 3 weeks ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated 3 weeks ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆57Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆81Updated 2 months ago
- 3D/4D volumetric rendering of microscopy data☆21Updated last week
- Simple watershed and agglomeration library for affinity graphs.☆19Updated 3 months ago