Alternatives and similar repositories for microviewer

Users that are interested in microviewer are comparing it to the libraries listed below

• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆65Updated 3 weeks ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆19Updated 3 months ago
• seung-lab / chunkflow
  Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
  ☆55Updated 7 months ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆171Updated this week
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆63Updated 2 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆60Updated last month
• funkelab / lsd
  🌈
  ☆67Updated 4 months ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆15Updated last week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆21Updated 2 weeks ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆41Updated 3 weeks ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆33Updated 10 months ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆38Updated last month
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆87Updated last week
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆188Updated 3 weeks ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆22Updated 2 years ago
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆17Updated 9 months ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆21Updated 2 weeks ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆27Updated 4 months ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆18Updated last week
• seung-lab / mapbuffer
  Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.
  ☆10Updated last week
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆40Updated last month
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆39Updated this week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 11 months ago
• haesleinhuepf / napari-assistant
  ☆33Updated 9 months ago
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆36Updated 9 months ago
• CAVEconnectome / MeshParty
  ☆40Updated 5 months ago
• abcucberkeley / PetaKit5D
  ☆49Updated 2 months ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆27Updated this week
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆34Updated 2 years ago