StructuralNeurobiologyLab / SyConnLinks
Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
☆41Updated last month
Alternatives and similar repositories for SyConn
Users that are interested in SyConn are comparing it to the libraries listed below
Sorting:
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆52Updated this week
- Tools for distributed alignment of massive images☆86Updated 2 weeks ago
- GPU-based 3D non-rigid volumetric registration☆41Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆17Updated last month
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated last month
- ☆45Updated 5 years ago
- ☆12Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- A napari plugin for itk-elastix☆39Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆136Updated 3 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 5 months ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- www.vaa3d.org☆79Updated 7 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 5 months ago
- Read and write Neuroglancer datasets programmatically.☆156Updated last week
- ☆18Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆18Updated 2 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- StarDist plugin for napari☆40Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆85Updated 3 weeks ago