Alternatives and similar repositories for SyConn

Users that are interested in SyConn are comparing it to the libraries listed below

• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆65Updated 3 weeks ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆92Updated this week
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆20Updated 4 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆60Updated last month
• morphonets / SNT
  The framework for quantification of neuronal anatomy
  ☆55Updated this week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆21Updated 2 weeks ago
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆143Updated this week
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆43Updated 5 months ago
• CAVEconnectome / nglui
  ☆13Updated 3 months ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆27Updated last week
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆138Updated last month
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated 2 years ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆29Updated this week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• bauerdavid / napari-nD-annotator
  ☆38Updated 2 months ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated 2 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆33Updated 10 months ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆21Updated 2 weeks ago
• funkelab / lsd
  🌈
  ☆67Updated 3 months ago
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆84Updated last week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆22Updated 2 years ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆19Updated 3 years ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆171Updated last week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆38Updated last month
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 10 months ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆35Updated this week
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last month