Alternatives and similar repositories for SyConn:

Users that are interested in SyConn are comparing it to the libraries listed below

• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆47Updated this week
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated this week
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆37Updated 3 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• CAVEconnectome / nglui
  ☆10Updated last month
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated this week
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆144Updated this week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 4 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆119Updated this week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated this week
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 2 weeks ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆26Updated this week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆34Updated 9 months ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• CAVEconnectome / MeshParty
  ☆36Updated 2 weeks ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• natverse / natverse
  Umbrella package to help install/load nat packages
  ☆11Updated 3 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆59Updated 2 years ago
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated 8 months ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 7 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆133Updated last week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆53Updated last month
• funkelab / lsd
  🌈
  ☆54Updated last year
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago