StructuralNeurobiologyLab / SyConn
Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
☆40Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for SyConn
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆44Updated last week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last week
- Block-wise task scheduling for large nD volumes.☆27Updated 3 weeks ago
- ☆10Updated last week
- ☆34Updated this week
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- Tools for distributed alignment of massive images☆75Updated last week
- 🌈☆52Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 3 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆78Updated last month
- Software package for neuron reconstruction and visualization☆38Updated 7 months ago
- Read and write Neuroglancer datasets programmatically.☆134Updated this week
- Scalable Optical Flow-based Image Montaging and Alignment☆54Updated this week
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆14Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆51Updated 4 years ago
- MorphoFeatures code and data☆18Updated last year
- Efficient cell detection in large images using cellfinder in napari☆24Updated 10 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆50Updated 2 months ago
- Distributed segmentation for bio-image-analysis☆36Updated 4 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆11Updated this week
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆24Updated this week
- Utils and convenience functions for large-scale bio-image analysis.☆48Updated last month
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- GPU-accelerated general purpose image processing and image analysis in napari☆34Updated last month
- ☆45Updated 4 years ago