StructuralNeurobiologyLab / SyConn
Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
☆41Updated 10 months ago
Alternatives and similar repositories for SyConn
Users that are interested in SyConn are comparing it to the libraries listed below
Sorting:
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆48Updated 3 weeks ago
- ☆12Updated this week
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated this week
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- Umbrella package to help install/load nat packages☆11Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- ☆36Updated last month
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- MorphoFeatures code and data☆21Updated 2 years ago
- Block-wise task scheduling for large nD volumes.☆30Updated last month
- WebGL-based viewer for volumetric data☆23Updated this week
- ☆45Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆15Updated this week
- CloudReg☆11Updated last year
- 🌈☆55Updated last month
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- Software package for neuron reconstruction and visualization☆38Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- Read and write Neuroglancer datasets programmatically.☆148Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆14Updated 8 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆55Updated this week