Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
☆46Jul 28, 2025Updated last year
Alternatives and similar repositories for SyConn
Users that are interested in SyConn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆40Jan 29, 2022Updated 4 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- Read and write Neuroglancer datasets programmatically.☆175Aug 13, 2026Updated 2 weeks ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Aug 9, 2026Updated 3 weeks ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆43Aug 23, 2024Updated 2 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆26Dec 26, 2022Updated 3 years ago
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 4 years ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 7 months ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆75Updated this week
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 11 months ago
- ☆17Feb 3, 2018Updated 8 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 3 months ago
- View connectomic data stored in neuPrint☆29Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆16Nov 2, 2016Updated 9 years ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆76Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Aug 1, 2026Updated 3 weeks ago
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…☆171Dec 6, 2023Updated 2 years ago
- Block-wise task scheduling for large nD volumes.☆33Aug 24, 2026Updated last week
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated 2 months ago
- Automatic segmentation of electron microscopy volumes☆80Jan 15, 2021Updated 5 years ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Versatile acquisition software for serial block-face electron microscopy☆26Aug 3, 2026Updated 3 weeks ago
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- 🌈☆70Oct 10, 2025Updated 10 months ago
- ☆64Updated this week
- ☆43Sep 1, 2025Updated 11 months ago
- PyTorch implementation of linear and convolutional layers with fixed, random feedback weights.☆15Mar 14, 2021Updated 5 years ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Aug 23, 2026Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆93Aug 3, 2026Updated 3 weeks ago
- A curated list of resources for 3D segmentation of neurites in EM images☆59Mar 11, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated last year
- Flood-Filling Networks for instance segmentation in 3d volumes.☆350Updated this week
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆28Feb 24, 2026Updated 6 months ago
- ☆12Mar 25, 2022Updated 4 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated 2 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Aug 28, 2018Updated 8 years ago