Alternatives and similar repositories for CAVEclient

Users that are interested in CAVEclient are comparing it to the libraries listed below

• CAVEconnectome / nglui
  ☆12Updated last week
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated last month
• berenslab / MorphoPy
  ☆42Updated last month
• htem / FANC_auto_recon
  Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
  ☆12Updated 2 weeks ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆24Updated last week
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆19Updated 2 months ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated last week
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• navis-org / navis
  Python library for analysis of neuroanatomical data.
  ☆102Updated last month
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆43Updated last week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated last week
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆154Updated this week
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆37Updated last month
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated last week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• ankilab / DeepD3
  ☆22Updated 4 months ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆18Updated last month
• BlueBrain / TMD
  A python package for the topological analysis of neurons.
  ☆28Updated 4 months ago
• brainglobe / morphapi
  A Python package to download neuronal morphologies
  ☆17Updated last week
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆27Updated 3 months ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆155Updated this week
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 3 weeks ago
• bkntr / brainways
  Brainways
  ☆18Updated last month
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year