Alternatives and similar repositories for CAVEclient

Users that are interested in CAVEclient are comparing it to the libraries listed below

• htem / FANC_auto_recon
  Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
  ☆12Updated 2 weeks ago
• CAVEconnectome / nglui
  ☆12Updated last week
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated last week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated last week
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆18Updated last month
• CAVEconnectome / MeshParty
  ☆36Updated 2 months ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated 3 weeks ago
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆13Updated last week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆43Updated 3 weeks ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆21Updated last year
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆32Updated 3 weeks ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated last week
• berenslab / MorphoPy
  ☆41Updated last month
• ankilab / DeepD3
  ☆22Updated 3 months ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated 2 months ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆18Updated 3 weeks ago
• bkntr / brainways
  Brainways
  ☆18Updated last month
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated last year
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year
• adamshch / SEUDO
  ☆8Updated 3 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• connectome-neuprint / neuprint-python
  Python client utilties for interacting with the neuPrint connectome analysis service
  ☆34Updated last week
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 11 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated last week
• neuroinformatics-unit / python-cookiecutter
  Utility to create a basic Python project structure with tests, CI etc.
  ☆32Updated 3 weeks ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated this week
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 months ago