Simple watershed and agglomeration library for affinity graphs.
β29Sep 18, 2025Updated 6 months ago
Alternatives and similar repositories for waterz
Users that are interested in waterz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).β11Jun 23, 2021Updated 4 years ago
- πβ67Oct 10, 2025Updated 6 months ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformersβ14Apr 17, 2023Updated 2 years ago
- Python scripts to read and write the CREMI hdf5 file format.β39Mar 21, 2023Updated 3 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.β19Oct 22, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Marching Cubes & Mesh Simplification on multi-label 3D images.β72Mar 18, 2026Updated 3 weeks ago
- Tool for graph-based image segmentation and analysisβ22Nov 12, 2017Updated 8 years ago
- Caffe: a fast open framework for deep learning. With OpenCL and CUDA support.β87Aug 18, 2018Updated 7 years ago
- Conversion of neuroimaging data for display in Neuroglancerβ31Sep 16, 2025Updated 6 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.β67Mar 17, 2026Updated 3 weeks ago
- Deep Learning for EM Connectomicsβ16Aug 18, 2022Updated 3 years ago
- Block-wise task scheduling for large nD volumes.β33Mar 17, 2026Updated 3 weeks ago
- β17Feb 3, 2018Updated 8 years ago
- Open source volume electron microscopy (vEM) datasets for connectomics.β17Nov 13, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways β’ AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- official implementation of the PatchPerPix instance segmentation methodβ35Jun 27, 2023Updated 2 years ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truthβ38Updated this week
- Semi automated image analysis toolkit for Connectomicsβ12Aug 21, 2019Updated 6 years ago
- A curated list of resources for 3D segmentation of neurites in EM imagesβ57Mar 11, 2024Updated 2 years ago
- β11Feb 8, 2023Updated 3 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomicsβ12Sep 7, 2021Updated 4 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstructionβ11Feb 9, 2021Updated 5 years ago
- β10Jan 7, 2020Updated 6 years ago
- β41Sep 1, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- WebGL-based viewer for volumetric dataβ25Updated this week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics dataβ24Apr 5, 2026Updated last week
- A unified environment for DNN-based automated segmentation of neuronal EM imagesβ38Aug 28, 2024Updated last year
- Command line tool for registration of very large 3D volumes.β16Jan 28, 2026Updated 2 months ago
- Tensorflow and Pytorch Version of Malis Lossβ17Nov 8, 2020Updated 5 years ago
- β12Mar 25, 2022Updated 4 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent versionβ59Feb 9, 2020Updated 6 years ago
- Multi-Object Tracking with Integer Linear Equationsβ38Mar 30, 2026Updated 2 weeks ago
- Automated Segmentation of cellular substructures in Electron Microscopyβ18Jan 28, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Read and write Neuroglancer datasets programmatically.β171Mar 31, 2026Updated last week
- Pytorch implementation of the LearnedRandomWalker moduleβ29Oct 28, 2020Updated 5 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordingsβ13Jun 26, 2021Updated 4 years ago
- The mutex watershed for image segmentation.β67May 6, 2021Updated 4 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructionsβ23Feb 24, 2026Updated last month
- β52Apr 3, 2026Updated last week
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neuralβ¦β77Dec 2, 2025Updated 4 months ago