Simple watershed and agglomeration library for affinity graphs.
β28Sep 18, 2025Updated 5 months ago
Alternatives and similar repositories for waterz
Users that are interested in waterz are comparing it to the libraries listed below
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).β11Jun 23, 2021Updated 4 years ago
- πβ67Oct 10, 2025Updated 4 months ago
- A library to facilitate machine learning on multi-dimensional images.β89Feb 17, 2026Updated 2 weeks ago
- Python scripts to read and write the CREMI hdf5 file format.β39Mar 21, 2023Updated 2 years ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformersβ14Apr 17, 2023Updated 2 years ago
- official implementation of the PatchPerPix instance segmentation methodβ35Jun 27, 2023Updated 2 years ago
- β17Feb 3, 2018Updated 8 years ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truthβ38Feb 2, 2026Updated last month
- Tool for graph-based image segmentation and analysisβ22Nov 12, 2017Updated 8 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.β43Jul 28, 2025Updated 7 months ago
- Caffe: a fast open framework for deep learning. With OpenCL and CUDA support.β87Aug 18, 2018Updated 7 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstructionβ11Feb 9, 2021Updated 5 years ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolysoβ¦β12May 15, 2023Updated 2 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasetsβ27Updated this week
- WebGL-based viewer for volumetric dataβ24Updated this week
- Conversion of neuroimaging data for display in Neuroglancerβ31Sep 16, 2025Updated 5 months ago
- β10Jan 7, 2020Updated 6 years ago
- β12Mar 25, 2022Updated 3 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomicsβ12Sep 7, 2021Updated 4 years ago
- A curated list of resources for 3D segmentation of neurites in EM imagesβ56Mar 11, 2024Updated last year
- Block-wise task scheduling for large nD volumes.β33Mar 28, 2025Updated 11 months ago
- Deep Learning for EM Connectomicsβ16Aug 18, 2022Updated 3 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordingsβ13Jun 26, 2021Updated 4 years ago
- Semi automated image analysis toolkit for Connectomicsβ12Aug 21, 2019Updated 6 years ago
- Multi-Object Tracker using Integer Linear Equationsβ38Dec 18, 2025Updated 2 months ago
- Command line tool for registration of very large 3D volumes.β16Jan 28, 2026Updated last month
- Pytorch implementation of the LearnedRandomWalker moduleβ29Oct 28, 2020Updated 5 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent versionβ59Feb 9, 2020Updated 6 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics dataβ22Feb 24, 2026Updated last week
- Tensorflow and Pytorch Version of Malis Lossβ17Nov 8, 2020Updated 5 years ago
- Automated Segmentation of cellular substructures in Electron Microscopyβ18Jan 28, 2026Updated last month
- GTree is a brain-wide tool for neuron tracing.β17Jan 13, 2021Updated 5 years ago
- β16Nov 2, 2016Updated 9 years ago
- β40Sep 1, 2025Updated 6 months ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Moβ¦β19Jan 22, 2026Updated last month
- Superhuman Accuracy on the SNEMI3D Connectomics Challengeβ14Feb 28, 2018Updated 8 years ago
- Software package for neuron reconstruction and visualizationβ40May 27, 2025Updated 9 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructionsβ21Updated this week
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.orgβ17Mar 10, 2018Updated 7 years ago