funkey / waterz
Simple watershed and agglomeration library for affinity graphs.
☆22Updated 6 months ago
Alternatives and similar repositories for waterz
Users that are interested in waterz are comparing it to the libraries listed below
Sorting:
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- ☆20Updated 4 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 3 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- 🌈☆55Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆55Updated last week
- ☆17Updated 7 years ago
- Distributed segmentation for bio-image-analysis☆38Updated this week
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated this week
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- MorphoFeatures code and data☆21Updated 2 years ago
- Command line tool for registration of very large 3D volumes.☆14Updated last year
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆28Updated 2 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Segmented anisotropic ssTEM dataset of neural tissue☆24Updated 11 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Affinity based segmentation algorithms and tools☆10Updated this week
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated last month
- A library to facilitate machine learning on multi-dimensional images.☆82Updated this week
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- ☆16Updated 8 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆48Updated 3 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Updated 2 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- Semi automated image analysis toolkit for Connectomics☆12Updated 5 years ago
- ☆10Updated last year