Simple watershed and agglomeration library for affinity graphs.
☆30Sep 18, 2025Updated 10 months ago
Alternatives and similar repositories for waterz
Users that are interested in waterz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- 🌈☆70Oct 10, 2025Updated 9 months ago
- A library to facilitate machine learning on multi-dimensional images.☆91Jul 6, 2026Updated 2 weeks ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers☆14Apr 17, 2023Updated 3 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 3 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆74Updated this week
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Caffe: a fast open framework for deep learning. With OpenCL and CUDA support.☆87Aug 18, 2018Updated 7 years ago
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Nov 13, 2024Updated last year
- Conversion of neuroimaging data for display in Neuroglancer☆31Jul 13, 2026Updated last week
- official implementation of the PatchPerPix instance segmentation method☆35Jun 27, 2023Updated 3 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Updated this week
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated 2 months ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Jul 14, 2026Updated last week
- ☆17Feb 3, 2018Updated 8 years ago
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 6 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆45Jul 28, 2025Updated 11 months ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆13May 15, 2023Updated 3 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆13Sep 7, 2021Updated 4 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- ☆43Sep 1, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- WebGL-based viewer for volumetric data☆25Jul 13, 2026Updated last week
- ☆12Mar 25, 2022Updated 4 years ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 5 months ago
- Tensorflow and Pytorch Version of Malis Loss☆17Nov 8, 2020Updated 5 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 5 months ago
- Multi-Object Tracking with Integer Linear Equations☆39Updated this week
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆196Jul 15, 2026Updated last week
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Jun 25, 2026Updated 3 weeks ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- ☆22Jan 6, 2026Updated 6 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆27Feb 24, 2026Updated 4 months ago