Simple watershed and agglomeration library for affinity graphs.
β30Sep 18, 2025Updated 11 months ago
Alternatives and similar repositories for waterz
Users that are interested in waterz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).β11Jun 23, 2021Updated 5 years ago
- πβ70Oct 10, 2025Updated 10 months ago
- A library to facilitate machine learning on multi-dimensional images.β93Aug 3, 2026Updated 3 weeks ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformersβ14Apr 17, 2023Updated 3 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.β19Updated this week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python scripts to read and write the CREMI hdf5 file format.β39Mar 21, 2023Updated 3 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.β75Aug 25, 2026Updated last week
- Tool for graph-based image segmentation and analysisβ22Nov 12, 2017Updated 8 years ago
- Caffe: a fast open framework for deep learning. With OpenCL and CUDA support.β87Aug 18, 2018Updated 8 years ago
- Open source volume electron microscopy (vEM) datasets for connectomics.β18Aug 17, 2026Updated 2 weeks ago
- Conversion of neuroimaging data for display in Neuroglancerβ31Aug 19, 2026Updated last week
- Deep Learning for EM Connectomicsβ16Aug 18, 2022Updated 4 years ago
- Block-wise task scheduling for large nD volumes.β33Aug 24, 2026Updated last week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics dataβ26Updated this week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β17Feb 3, 2018Updated 8 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasetsβ27Aug 25, 2026Updated last week
- Semi automated image analysis toolkit for Connectomicsβ12Aug 21, 2019Updated 7 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.β46Jul 28, 2025Updated last year
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolysoβ¦β13May 15, 2023Updated 3 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomicsβ14Sep 7, 2021Updated 4 years ago
- β10Feb 8, 2023Updated 3 years ago
- A curated list of resources for 3D segmentation of neurites in EM imagesβ59Mar 11, 2024Updated 2 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstructionβ11Feb 9, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β43Sep 1, 2025Updated 11 months ago
- β10Jan 7, 2020Updated 6 years ago
- WebGL-based viewer for volumetric dataβ25Updated this week
- β12Mar 25, 2022Updated 4 years ago
- Command line tool for registration of very large 3D volumes.β16Jan 28, 2026Updated 7 months ago
- Tensorflow and Pytorch Version of Malis Lossβ17Nov 8, 2020Updated 5 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM imagesβ38Aug 28, 2024Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent versionβ59Feb 9, 2020Updated 6 years ago
- Read and write Neuroglancer datasets programmatically.β175Aug 13, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated Segmentation of cellular substructures in Electron Microscopyβ18Jan 28, 2026Updated 7 months ago
- Pytorch implementation of the LearnedRandomWalker moduleβ29Oct 28, 2020Updated 5 years ago
- Multi-Object Tracking with Integer Linear Equationsβ40Jul 21, 2026Updated last month
- GUI to compute and explore receptive fields, primarily from calcium imaging recordingsβ13Jun 26, 2021Updated 5 years ago
- The mutex watershed for image segmentation.β68May 6, 2021Updated 5 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ200Updated this week
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.orgβ17Mar 10, 2018Updated 8 years ago