funkey / waterzLinks
Simple watershed and agglomeration library for affinity graphs.
β25Updated 9 months ago
Alternatives and similar repositories for waterz
Users that are interested in waterz are comparing it to the libraries listed below
Sorting:
- Python scripts to read and write the CREMI hdf5 file format.β38Updated 2 years ago
- πβ60Updated 5 months ago
- β21Updated 4 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).β11Updated 4 years ago
- β17Updated 7 years ago
- Utils and convenience functions for large-scale bio-image analysis.β58Updated last month
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ179Updated 2 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for β¦β36Updated last month
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.β29Updated 2 years ago
- Deep Learning for EM Connectomicsβ15Updated 3 years ago
- Tensorflow and Pytorch Version of Malis Lossβ17Updated 4 years ago
- MorphoFeatures code and dataβ21Updated 2 years ago
- Distributed segmentation for bio-image-analysisβ38Updated 3 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Instβ¦β70Updated 2 years ago
- Open source volume electron microscopy (vEM) datasets for connectomics.β14Updated 9 months ago
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentationβ16Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.β53Updated this week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ74Updated 4 years ago
- π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumesβ51Updated last year
- A curated list of resources for 3D segmentation of neurites in EM imagesβ54Updated last year
- β10Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Developmentβ31Updated 2 years ago
- The mutex watershed for image segmentation.β67Updated 4 years ago
- β29Updated last year
- Affinity based segmentation algorithms and toolsβ10Updated 3 months ago
- β93Updated last month
- official implementation of the PatchPerPix instance segmentation methodβ34Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent versionβ59Updated 5 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.β13Updated 6 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by theβ¦β19Updated 4 years ago