Simple watershed and agglomeration library for affinity graphs.
β30Sep 18, 2025Updated 8 months ago
Alternatives and similar repositories for waterz
Users that are interested in waterz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).β11Jun 23, 2021Updated 4 years ago
- πβ70Oct 10, 2025Updated 8 months ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformersβ14Apr 17, 2023Updated 3 years ago
- Python scripts to read and write the CREMI hdf5 file format.β39Mar 21, 2023Updated 3 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.β19Apr 18, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tool for graph-based image segmentation and analysisβ22Nov 12, 2017Updated 8 years ago
- Caffe: a fast open framework for deep learning. With OpenCL and CUDA support.β87Aug 18, 2018Updated 7 years ago
- Conversion of neuroimaging data for display in Neuroglancerβ31Sep 16, 2025Updated 8 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.β68May 27, 2026Updated 2 weeks ago
- Deep Learning for EM Connectomicsβ16Aug 18, 2022Updated 3 years ago
- Block-wise task scheduling for large nD volumes.β32May 4, 2026Updated last month
- β17Feb 3, 2018Updated 8 years ago
- Open source volume electron microscopy (vEM) datasets for connectomics.β18Nov 13, 2024Updated last year
- Data backend for fast proofreading of cell segmentations in connectomics datasetsβ27Jun 4, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- official implementation of the PatchPerPix instance segmentation methodβ35Jun 27, 2023Updated 2 years ago
- Semi automated image analysis toolkit for Connectomicsβ12Aug 21, 2019Updated 6 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.β45Jul 28, 2025Updated 10 months ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolysoβ¦β14May 15, 2023Updated 3 years ago
- β10Feb 8, 2023Updated 3 years ago
- β10Jan 7, 2020Updated 6 years ago
- WebGL-based viewer for volumetric dataβ25Jun 4, 2026Updated last week
- β42Sep 1, 2025Updated 9 months ago
- A unified environment for DNN-based automated segmentation of neuronal EM imagesβ38Aug 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tensorflow and Pytorch Version of Malis Lossβ17Nov 8, 2020Updated 5 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent versionβ59Feb 9, 2020Updated 6 years ago
- Multi-Object Tracking with Integer Linear Equationsβ39Updated this week
- Automated Segmentation of cellular substructures in Electron Microscopyβ18Jan 28, 2026Updated 4 months ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordingsβ13Jun 26, 2021Updated 4 years ago
- The mutex watershed for image segmentation.β68May 6, 2021Updated 5 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructionsβ26Feb 24, 2026Updated 3 months ago
- β56May 26, 2026Updated 2 weeks ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neuralβ¦β77May 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.orgβ17Mar 10, 2018Updated 8 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomicsβ195Updated this week
- Guide to python package development for scientistsβ27Updated this week
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Moβ¦β23Jun 1, 2026Updated last week
- β16Nov 2, 2016Updated 9 years ago
- β22Jan 6, 2026Updated 5 months ago
- Software package for neuron reconstruction and visualizationβ40May 27, 2025Updated last year