Alternatives and similar repositories for waterz:

Users that are interested in waterz are comparing it to the libraries listed below

• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated last year
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆12Updated 3 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 3 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆52Updated 3 weeks ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• divelab / deepem3d
  ☆18Updated 7 years ago
• funkelab / lsd
  🌈
  ☆54Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 7 months ago
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆9Updated 3 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆13Updated last year
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆21Updated 5 months ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• BigNeuron / Data
  ☆16Updated 8 years ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.
  ☆13Updated this week
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆27Updated this week
• HelmholtzAI-Consultants-Munich / Malis-Loss
  Tensorflow and Pytorch Version of Malis Loss
  ☆17Updated 4 years ago
• nilsec / micron
  Library for automatic tracking of microtubules in large scale EM datasets.
  ☆9Updated last year
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆66Updated 2 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆29Updated last month
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆12Updated 5 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated 2 months ago
• janelia-cellmap / heinrich-2021a
  Resources for Heinrich et al., 2021
  ☆18Updated 3 years ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated last month
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• Rhoana / biologicalgraphs
  Biologically-Constrained Graphs for Global Connectomics Reconstruction
  ☆10Updated 4 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆15Updated this week