segrelab / cometsLinks
Computation of Microbial Ecosystems in Time and Space
☆26Updated 3 weeks ago
Alternatives and similar repositories for comets
Users that are interested in comets are comparing it to the libraries listed below
Sorting:
- ReFramed: metabolic modeling package☆62Updated 2 months ago
- Enzyme-constrained genome-scale models in python☆29Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 9 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated 2 weeks ago
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- The BiGG Models website server☆85Updated 6 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆64Updated last week
- Python package for building and analyzing models using ModelSEED☆24Updated 7 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆118Updated last week
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 3 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆48Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆23Updated last week
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated 2 weeks ago
- Python package to study microbial communities using metabolic modeling.☆111Updated this week
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆29Updated 6 years ago
- Simulate microbial community batch culture experiments.☆42Updated last year
- cameo - computer aided metabolic engineering & optimization