Computation of Microbial Ecosystems in Time and Space
☆27May 5, 2026Updated 2 weeks ago
Alternatives and similar repositories for comets
Users that are interested in comets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated 2 months ago
- Python package to study microbial communities using metabolic modeling.☆128Mar 31, 2026Updated last month
- ☆27Dec 20, 2023Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 8 months ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago
- que paquete☆10Jul 17, 2024Updated last year
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Python package for building and analyzing models using ModelSEED☆27Feb 11, 2026Updated 3 months ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jun 18, 2020Updated 5 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated last month
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week
- Analysis of ensembles of metabolic network reconstructions☆22Feb 9, 2026Updated 3 months ago
- ☆17May 13, 2025Updated last year
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 5 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- The BiGG Models website server☆90Nov 7, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆24Oct 19, 2023Updated 2 years ago
- ☆19Aug 29, 2025Updated 8 months ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Python package for creating, calibrating and simulating RBA models☆13Apr 8, 2026Updated last month
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Python Environment for Modeling and Simulating Biological Systems☆141Apr 10, 2026Updated last month
- From annotated genomes to metabolic screening in large scale microbiotas☆72Apr 27, 2026Updated 3 weeks ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- agent based modelling☆37Aug 28, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Core Interface and Engine for Vivarium 1.0☆36Dec 3, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- An R package for NASA’s GEDI Level 4A data download, processing and visualization.☆25Apr 3, 2023Updated 3 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆31Mar 5, 2019Updated 7 years ago
- Simulate microbial community batch culture experiments.☆43Oct 31, 2024Updated last year