Alternatives and similar repositories for comets:

Users that are interested in comets are comparing it to the libraries listed below

• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated last year
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆57Updated 5 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated 2 weeks ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆96Updated 3 weeks ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆20Updated last month
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆59Updated 3 weeks ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated 3 months ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆18Updated 8 months ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 5 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆68Updated 2 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆44Updated 4 years ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 5 months ago
• jensenlab / BacterAI
  ☆23Updated last year
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆47Updated last month
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆18Updated 6 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆77Updated last month
• SBRG / bigg_models
  The BiGG Models website server
  ☆80Updated 5 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆18Updated 2 months ago
• rcolpo / pgp_reconstruction
  Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
  ☆12Updated last year
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆38Updated last month
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆161Updated 4 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated last year
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆105Updated 3 weeks ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆57Updated this week
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆129Updated last year
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆11Updated last year
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆14Updated last year