Alternatives and similar repositories for comets

Users that are interested in comets are comparing it to the libraries listed below

• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated 7 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆60Updated this week
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆62Updated 7 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆140Updated last month
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆58Updated 2 weeks ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated this week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆23Updated 5 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆107Updated last week
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated this week
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆43Updated 2 weeks ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆118Updated 2 years ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆28Updated 6 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated 3 weeks ago
• Emergent-Behaviors-in-Biology / community-simulator
  Simulate microbial community batch culture experiments.
  ☆42Updated 10 months ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated 2 years ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆181Updated last week
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆199Updated last month
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆102Updated last month
• jensenlab / BacterAI
  ☆25Updated last year
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆153Updated last year
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆85Updated last month
• latendre / PythonCyc
  ☆22Updated 5 years ago
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated 2 weeks ago