Computation of Microbial Ecosystems in Time and Space
☆26Feb 26, 2026Updated 3 weeks ago
Alternatives and similar repositories for comets
Users that are interested in comets are comparing it to the libraries listed below
Sorting:
- Python interface for running COMETS simulations and analyzing the results☆15Feb 24, 2026Updated 3 weeks ago
- Python package to study microbial communities using metabolic modeling.☆121Mar 11, 2026Updated last week
- ☆27Dec 20, 2023Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 6 months ago
- memote – the genome-scale metabolic model test suite☆145Aug 14, 2025Updated 7 months ago
- Whole cell model of E. coli implemented with Vivarium☆30Updated this week
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Python package for building and analyzing models using ModelSEED☆26Feb 11, 2026Updated last month
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆123Nov 7, 2022Updated 3 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- ☆16Jun 18, 2020Updated 5 years ago
- Analysis of ensembles of metabolic network reconstructions☆21Feb 9, 2026Updated last month
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Mar 13, 2026Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Dec 4, 2025Updated 3 months ago
- ☆17May 13, 2025Updated 10 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 3 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- The BiGG Models website server