segrelab / comets
Computation of Microbial Ecosystems in Time and Space
☆23Updated last week
Alternatives and similar repositories for comets:
Users that are interested in comets are comparing it to the libraries listed below
- Enzyme-constrained genome-scale models in python☆26Updated last year
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆54Updated last month
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 6 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated this week
- ReFramed: metabolic modeling package☆58Updated this week
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆60Updated 2 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Python package for building and analyzing models using ModelSEED☆22Updated last week
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 2 months ago
- The BiGG Models website server☆82Updated 5 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆14Updated 8 months ago
- Python package to study microbial communities using metabolic modeling.☆97Updated 2 weeks ago
- Repository of tutorials for The COBRA Toolbox☆21Updated this week
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated last month
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆26Updated 6 years ago
- Python interface for running COMETS simulations and analyzing the results☆12Updated 2 months ago
- memote – the genome-scale metabolic model test suite☆131Updated last year
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Updated last year
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆14Updated last month
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 11 months ago
- A python implementation of flux balance analysis to model microbial metabolism☆27Updated 2 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆108Updated 2 months ago
- ☆24Updated 6 months ago
- ☆22Updated 4 years ago
- CarveMe: genome-scale metabolic model reconstruction☆165Updated 7 months ago