A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation and tutorials:
☆22Sep 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for COBRA-k
Users that are interested in COBRA-k are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Sep 22, 2026Updated 2 weeks ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Updated this week
- ☆18Feb 27, 2024Updated 2 years ago
- Computation of Microbial Ecosystems in Time and Space☆29Sep 8, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The generic genome-scale metabolic model of Homo sapiens☆174Updated this week
- DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks☆12May 30, 2024Updated 2 years ago
- Tutorial on how to use Ginkgo AI embedding APIs for scientific problems☆19Nov 22, 2024Updated last year
- ☆10Jul 21, 2022Updated 4 years ago
- Python interface for running COMETS simulations and analyzing the results☆15May 19, 2026Updated 4 months ago
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 2 years ago
- ☆20Aug 29, 2025Updated last year
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- A python library for metabolic networks sampling and analysis☆69May 22, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- Learning Neural Differential Algebraic Equations via Operator Splitting☆21Sep 22, 2026Updated 2 weeks ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆291Updated this week
- Need a quick way to make sure your design/diagram/figure is color blind-friendly? Use this simulator to check out if your colors will ret…☆12Oct 31, 2020Updated 5 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Mar 12, 2018Updated 8 years ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆98Jun 15, 2026Updated 3 months ago
- ☆17May 8, 2024Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆94Updated this week
- Python toolbox for multi-omics data mapping and analysis☆29Apr 13, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Contains CHARMING.py and its associated README.md☆13Oct 20, 2022Updated 3 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 4 months ago
- protein docking using a density-based descriptor for atoms charge and dynamics☆14Nov 17, 2022Updated 3 years ago
- A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism☆15Feb 12, 2025Updated last year
- COBRApy is a package for constraint-based modeling of metabolic networks.☆589Updated this week
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆32Jun 21, 2022Updated 4 years ago
- 代谢网络模型构建和使用实操☆33Mar 18, 2023Updated 3 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆18Sep 29, 2026Updated last week
- A javascript library for building, exploring, and sharing spatially structured models of biological systems☆16May 26, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆20Jul 18, 2024Updated 2 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆228Sep 22, 2026Updated 2 weeks ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- Reconstruction algorithms for Python☆28Oct 23, 2024Updated last year
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆47Jul 27, 2026Updated 2 months ago
- Enzyme kinetics data extraction pipeline☆18Sep 7, 2026Updated last month
- GSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s☆21Feb 28, 2021Updated 5 years ago