Dynamic FBA for use with COBRApy metabolic models
☆10Sep 26, 2023Updated 2 years ago
Alternatives and similar repositories for surfin_fba
Users that are interested in surfin_fba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- Python package to study microbial communities using metabolic modeling.☆135Aug 27, 2026Updated last week
- Computation of Microbial Ecosystems in Time and Space☆28Aug 19, 2026Updated 2 weeks ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- ☆10Dec 15, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆74May 6, 2025Updated last year
- ☆11Aug 26, 2022Updated 4 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 9 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Simulate microbial community batch culture experiments.☆43Oct 31, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Learning Ontologies Via Embeddings☆12Jul 6, 2023Updated 3 years ago
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated 2 months ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆25Aug 24, 2026Updated last week
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- memote – the genome-scale metabolic model test suite☆151Aug 14, 2025Updated last year
- Development guidlines for software within NBIS.☆17Jul 1, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Constraint-Based Reconstruction and EXascale Analysis☆46Oct 23, 2024Updated last year
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- ☆11Feb 4, 2021Updated 5 years ago
- Python API and command-line tool for Sci-hub☆13Jun 26, 2021Updated 5 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆287Aug 24, 2026Updated last week
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 10 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- ☆11Dec 4, 2019Updated 6 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Accompanying code for AAAI 2021 publication - High-Dimensional Bayesian Optimization via Tree-Structured Additive Models☆11Jun 19, 2024Updated 2 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated last month
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated 2 years ago
- Beiwe is a smartphone-based digital phenotyping research platform. This repository contains some data analysis code.☆14Feb 10, 2020Updated 6 years ago
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated last year
- MGnify RESTful API☆10Apr 10, 2026Updated 4 months ago