Alternatives and similar repositories for reconstructor:

Users that are interested in reconstructor are comparing it to the libraries listed below

• kelwyres / Bactabolize
  ☆38Updated last week
• chevrettelab / gator-gc
  ☆14Updated last week
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆13Updated last year
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆74Updated 5 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated this week
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 2 weeks ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆33Updated last year
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆58Updated 4 years ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆92Updated last year
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated 7 months ago
• EBI-Metagenomics / mettannotator
  ☆70Updated this week
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 3 years ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆49Updated 3 weeks ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆61Updated 4 months ago
• ghoresh11 / twilight
  All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis
  ☆15Updated 4 years ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆78Updated this week
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆64Updated this week
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆39Updated last month
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆48Updated 4 months ago
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆84Updated last week
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆12Updated last month
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆54Updated 9 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 6 months ago
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆18Updated 2 years ago
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆69Updated 10 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated 2 weeks ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆57Updated 2 weeks ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆62Updated 3 months ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 3 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆62Updated 2 years ago