FLYCOP (FLexible sYnthetic Consortium OPtimization)
☆12Sep 24, 2018Updated 8 years ago
Alternatives and similar repositories for FLYCOP
Users that are interested in FLYCOP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 4 months ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆19Sep 26, 2025Updated last year
- microbiome data simulation package☆22Oct 2, 2025Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆19May 11, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Updated this week
- SMETANA: a tool to analyse interactions in microbial communities☆76May 6, 2025Updated last year
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆27Jul 15, 2024Updated 2 years ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆16Oct 24, 2020Updated 5 years ago
- Computation of Microbial Ecosystems in Time and Space☆29Sep 8, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆38Jan 21, 2026Updated 8 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated 2 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 4 months ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 7 months ago
- Analysis of ensembles of metabolic network reconstructions☆22Sep 3, 2026Updated last month
- Bulk and single-cell Multi-Omics ground truth Simulator in R☆14Feb 10, 2026Updated 8 months ago
- ☆16May 21, 2017Updated 9 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆70Oct 3, 2026Updated last week
- Python package to study microbial communities using metabolic modeling.☆138Oct 1, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 'Pebble' is a family of themes for RStudio 1.2.x☆13Oct 6, 2023Updated 3 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- ☆22Jan 28, 2021Updated 5 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 9 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Sep 22, 2026Updated 2 weeks ago
- ☆11Apr 17, 2025Updated last year
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 2 years ago
- Gene Set Clustering based on Functional annotation☆24May 3, 2024Updated 2 years ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 6 years ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Five Letters is a challenging word puzzle game where you try to guess the secret five letter word.☆25Feb 17, 2024Updated 2 years ago
- ☆27Mar 26, 2024Updated 2 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated last year