Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)
☆14May 7, 2016Updated 10 years ago
Alternatives and similar repositories for gim3e
Users that are interested in gim3e are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Bio-curation library for modelling cellular signalling☆10May 20, 2020Updated 6 years ago
- A container for all enzyme constrained models created by GECKO.☆19Sep 24, 2026Updated last month
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PySB tutorials and examples for IPython (Jupyter) notebook☆10Sep 13, 2021Updated 5 years ago
- Computation of Microbial Ecosystems in Time and Space☆31Updated this week
- Website for the animal traits database☆15Dec 13, 2023Updated 2 years ago
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 4 months ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆40Jan 11, 2019Updated 7 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Sep 22, 2026Updated last month
- some code for linlog model simulation☆10Sep 16, 2021Updated 5 years ago
- ☆10Aug 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆71Nov 5, 2026Updated last week
- Supplementary data for co-occurrence manuscript☆11Dec 19, 2019Updated 6 years ago
- An automated model test system for synthetic biology models of gene expression and regulation.☆16Sep 17, 2020Updated 6 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 4 years ago
- ☆10Nov 4, 2026Updated last week
- Collection of genome-scale metabolic models, genomes, and scripts for At-LSPHERE bacterial culture collection☆10Jul 25, 2023Updated 3 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 5 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 7 years ago
- PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs…☆10Nov 27, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆27Jul 15, 2024Updated 2 years ago
- Python interface for running COMETS simulations and analyzing the results☆15May 19, 2026Updated 5 months ago
- Reconstruction algorithms for Python☆28Oct 23, 2024Updated 2 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆33Feb 28, 2018Updated 8 years ago
- The generic genome-scale metabolic model of Homo sapiens☆177Updated this week
- REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models …☆10Oct 11, 2022Updated 4 years ago
- ☆10Sep 29, 2023Updated 3 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- FluxGAT introduces a graph neural network (GNN) model designed to predict gene essentiality by utilising graphical representations derive…☆11Mar 5, 2026Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Bayesian metabolic flux analysis☆10Aug 29, 2018Updated 8 years ago
- ☆23Aug 28, 2020Updated 6 years ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆20Updated this week
- CarveMe: genome-scale metabolic model reconstruction☆225Sep 12, 2025Updated last year
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆26Updated this week
Are these results useful?