some code for linlog model simulation
☆10Sep 16, 2021Updated 5 years ago
Alternatives and similar repositories for emll
Users that are interested in emll are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computation of Microbial Ecosystems in Time and Space☆30Sep 8, 2026Updated last month
- Causal and probabilistic reasoning with continuous time dynamical systems☆21Aug 29, 2025Updated last year
- ☆13Aug 4, 2026Updated 2 months ago
- Python interface for running COMETS simulations and analyzing the results☆15May 19, 2026Updated 4 months ago
- Posterior Server☆16Nov 10, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- BSMN common data processing pipeline☆11Jun 6, 2025Updated last year
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- XPert: A Knowledge-Informed Dual-Branch Transformer Model for Predicting Drug-Induced Cellular Perturbation Effects☆27Nov 22, 2025Updated 10 months ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- ☆12Oct 7, 2020Updated 6 years ago
- D3.js based visualizations of cobrapy metabolic models☆55Mar 10, 2020Updated 6 years ago
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- Estimating time trees from very large phylogenies☆27Sep 8, 2026Updated last month
- Twitter Platform Demos — Twitter APIs & Node in the Browser, on a Raspberry Pi, and with an AR.Drone!☆26Nov 26, 2015Updated 10 years ago
- ☆12Jan 27, 2022Updated 4 years ago
- Nested lists published on GitHub.☆13Sep 7, 2022Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆28May 3, 2023Updated 3 years ago
- cfid: R package for identifying counterfactuals.☆11Dec 11, 2025Updated 10 months ago
- ☆10Jun 13, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Weighted matrix factorization on the GPU with Theano and scikits.cuda☆12Sep 8, 2014Updated 12 years ago
- A repository for reproducing experiments from the TxPert paper☆54Mar 25, 2026Updated 6 months ago
- Geometry-preserving Adaptive Mesher☆36Sep 3, 2024Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- Running Particle Swarm Optimization on Graphic Processing Units☆10Apr 22, 2017Updated 9 years ago
- Gibbs sampling for expanded ensembles and replica exchange simulations☆11Jun 1, 2014Updated 12 years ago
- ☆32Aug 6, 2017Updated 9 years ago
- A python toolbox for 13C metabolic flux analysis☆25Jul 7, 2025Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆40Jan 11, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python tools for Morse Smale Complex analysis and visualization☆14Nov 10, 2021Updated 4 years ago
- Code in support of the paper Continuous Mixtures of Tractable Probabilistic Models☆12Oct 12, 2024Updated 2 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated this week
- A library of to show data (in browser, evcxr_jupyter) as table, chart...☆29Apr 14, 2025Updated last year
- A Shiny app to help people learn (and play with) Hamiltonian Monte Carlo sampling☆11Feb 8, 2025Updated last year
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 3 months ago
- Modelling epidemiological dynamics and performing inference in these models☆27Jul 30, 2021Updated 5 years ago