A javascript library for building, exploring, and sharing spatially structured models of biological systems
☆16May 8, 2026Updated last week
Alternatives and similar repositories for cacatoo
Users that are interested in cacatoo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository to host data standards for the ALIFE community.☆16Apr 24, 2023Updated 3 years ago
- A Simulator for Bacterial Machine learning and Genome-Wide Association Studies☆22Jul 21, 2021Updated 4 years ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆28Mar 8, 2023Updated 3 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆14Aug 20, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Symbulation is a software model of symbiosis built using Empirical☆15May 1, 2026Updated 2 weeks ago
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated 2 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- Python phylogeny tracker for in silico evolution experiments☆11May 5, 2026Updated 2 weeks ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Chromaria is a software platform for artificial life experiments. http://eplex.cs.ucf.edu/chromaria/home.☆12Jun 7, 2021Updated 4 years ago
- ☆17May 8, 2024Updated 2 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- Source code for the paper Hierarchically Organized Latent Modules for Exploratory Search in Morphogenetic Systems☆14Dec 15, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Visualization of metabolic models in Makie.☆22Feb 15, 2025Updated last year
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- ☆11Oct 16, 2025Updated 7 months ago
- The Forum Post Assistant (FPA) script has been developed to assist Joomla!® forum posters to be able to post relevant system, instance, P…☆28May 9, 2025Updated last year
- Interactive visualization method for ancestral recombination graphs☆20May 11, 2026Updated last week
- Efficient 3D force-directed graph demonstration.☆11Jul 29, 2018Updated 7 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 8 months ago
- ☆17May 13, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆23May 16, 2020Updated 6 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- A multi-agent soccer simulator in a grid-world environment, with agents implementing different reinforcement learning algorithms☆13Jun 4, 2017Updated 8 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 3 months ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- 2016 3D graphs for Oculus Rift DK2 and Leap Motion support. Built before Oculus Touch released.☆18Apr 26, 2018Updated 8 years ago
- Evolvable Hardware: Begin using the BitstreamEvolution Open Source Toolkit☆16May 4, 2026Updated 2 weeks ago
- An unofficial Beamer template based on the original PPTX UGM Template☆11Feb 19, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆39Apr 20, 2026Updated last month
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- ☆11Nov 10, 2023Updated 2 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 3 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20Apr 27, 2026Updated 3 weeks ago