bramvandijk88 / cacatooLinks
A javascript library for building, exploring, and sharing spatially structured models of biological systems
☆16Updated 2 weeks ago
Alternatives and similar repositories for cacatoo
Users that are interested in cacatoo are comparing it to the libraries listed below
Sorting:
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆173Updated last month
- Sydney Phylogenetics Workshop☆67Updated 5 months ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Open-source usearch☆127Updated 4 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆85Updated 3 weeks ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- Convert various sequence formats to FASTA☆140Updated this week
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆94Updated last year
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆77Updated last week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆167Updated 3 months ago
- A user-friendly workflow for phylogenomics☆224Updated 2 weeks ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆109Updated 2 years ago
- Efficient phylogenomic software by maximum likelihood☆203Updated 4 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Updated last year
- ☆49Updated 2 weeks ago
- Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073…☆14Updated 4 years ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆204Updated this week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆208Updated 4 months ago
- ☆13Updated last month
- FUNGuild: parsing OTUs into functional guilds☆124Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆174Updated last week
- Bioinformatics Tools☆90Updated this week
- WtP: Phage identification via nextflow and docker or singularity☆104Updated 3 weeks ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated 4 months ago
- ☆18Updated 3 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆176Updated last week