gvbarroso / iSMC
The integrated Sequentially Markovian Coalescent
☆13Updated 2 weeks ago
Alternatives and similar repositories for iSMC:
Users that are interested in iSMC are comparing it to the libraries listed below
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Software for ancestry estimation in unrelated individuals☆18Updated last week
- Sampling and inference of genealogies with recombination☆30Updated 6 months ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- ☆28Updated 2 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆32Updated last week
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 9 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 7 months ago
- R package for analysis of hybrids and hybrid zones☆20Updated last year
- ☆20Updated 6 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆58Updated 5 months ago
- Repository for speciation genomics website☆25Updated 8 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- feature-based deep learning for the identification of selective sweeps☆54Updated 3 weeks ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- An R function to compute Concordance Factors from SNP datasets☆13Updated 4 months ago
- ☆26Updated last year
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- GONE: Scripts, programs and an example data set☆46Updated last year
- ☆13Updated 7 years ago
- Infer demographic history with the Moran model☆47Updated last month
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ☆39Updated last year
- Quantifying Introgression via Branch Lengths☆50Updated 2 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Updated 2 years ago