gvbarroso / iSMCLinks
The integrated Sequentially Markovian Coalescent
☆15Updated 5 months ago
Alternatives and similar repositories for iSMC
Users that are interested in iSMC are comparing it to the libraries listed below
Sorting:
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Updated 2 months ago
- Sampling and inference of genealogies with recombination☆45Updated 4 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- ☆31Updated 2 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- An R function to compute Concordance Factors from SNP datasets☆14Updated 11 months ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- GONE: Scripts, programs and an example data set☆47Updated 3 months ago
- Infer demographic history with the Moran model☆49Updated 4 months ago
- Topology weighting from unphased genotypes of any ploidy☆15Updated 3 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆54Updated 4 months ago
- ☆13Updated 4 years ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated this week
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Updated 2 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated 6 months ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- ☆20Updated last year
- R package for pedigree inference based on SNP data☆28Updated 2 months ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Resources for Brown University's BIOL 1435 course.☆22Updated last year
- ☆42Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago