The integrated Sequentially Markovian Coalescent
☆16Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for iSMC
Users that are interested in iSMC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Oct 5, 2026Updated last month
- A coalescent simulator for genome-scale sequences☆46Jan 2, 2024Updated 2 years ago
- ☆13Oct 26, 2026Updated last week
- Software for inferring coalescence rates for unphased, low-coverage genomes☆11Jun 11, 2025Updated last year
- ☆11Jul 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 6 months ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 3 years ago
- BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models☆11Apr 30, 2025Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 8 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆76Mar 27, 2026Updated 7 months ago
- ☆13Oct 30, 2026Updated last week
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated last year
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 9 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆20Jun 24, 2024Updated 2 years ago
- Coalescence X Translation☆12Mar 13, 2026Updated 7 months ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 4 years ago
- LASSI-Plus: A program to calculate haplotype frequency spectrum statistics☆13Sep 29, 2026Updated last month
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Simulate ARGs and genomic sequence data using population genetic models☆219Oct 31, 2026Updated last week
- ☆14Dec 3, 2024Updated last year
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Software package for estimating fine-scale recombination rate.☆20Jun 8, 2021Updated 5 years ago
- A toolbox for C++ devs wanting to build geospatial population genetics simulators !☆11May 4, 2025Updated last year
- Computational Analysis of Gene Expression Evolution☆49Apr 17, 2026Updated 6 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Template for living data workflow☆13Jan 30, 2019Updated 7 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated 3 months ago
- http://datamgmt.org☆12Aug 14, 2020Updated 6 years ago
- CSEE 2021 Workshop: R package developement for researchers☆17Aug 16, 2021Updated 5 years ago
- ☆14Sep 12, 2025Updated last year
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago
- Time-stratified f-statistics☆19Aug 1, 2025Updated last year