gvbarroso / iSMC
The integrated Sequentially Markovian Coalescent
☆13Updated last month
Alternatives and similar repositories for iSMC:
Users that are interested in iSMC are comparing it to the libraries listed below
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Software for estimating genome-wide genealogies for thousands of samples☆32Updated last week
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Sampling and inference of genealogies with recombination☆29Updated 7 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated last week
- Software for ancestry estimation in unrelated individuals☆18Updated last week
- feature-based deep learning for the identification of selective sweeps☆55Updated 2 weeks ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 3 months ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 7 months ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Updated last year
- Infer demographic history with the Moran model☆47Updated 2 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 10 months ago
- ☆29Updated 2 years ago
- GONE: Scripts, programs and an example data set☆46Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 6 months ago
- ☆13Updated 7 years ago
- ☆39Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated this week
- ☆20Updated 7 months ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Repository for speciation genomics website☆25Updated 9 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆26Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago