The integrated Sequentially Markovian Coalescent
☆15Mar 10, 2026Updated last month
Alternatives and similar repositories for iSMC
Users that are interested in iSMC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 2 weeks ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated last month
- A coalescent simulator for genome-scale sequences☆46Jan 2, 2024Updated 2 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆46Apr 17, 2026Updated 2 weeks ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 3 months ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Simulate ARGs and genomic sequence data using population genetic models☆214Apr 15, 2026Updated 3 weeks ago
- Software package for estimating fine-scale recombination rate.☆18Jun 8, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Time-stratified f-statistics☆16Aug 1, 2025Updated 9 months ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 8 months ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated 10 months ago
- Template for living data workflow☆13Jan 30, 2019Updated 7 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆15Apr 27, 2026Updated last week
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- TR annotation tool VAMPIRE☆18Apr 26, 2026Updated last week
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 6 months ago
- Sampling and inference of genealogies with recombination☆56Apr 10, 2026Updated 3 weeks ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated last month
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 5 years ago
- QGIS svg icons - Animal silhouettes☆12Nov 17, 2018Updated 7 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 2 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆20Nov 18, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 8 months ago
- Infer the age of ancestral nodes in a tree sequence.☆26Apr 4, 2026Updated last month
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 4 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated 9 months ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆44Oct 30, 2025Updated 6 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Population-scale Ancestral Recombination Graph (ARG) library☆183Updated this week