🧬 gget enables efficient querying of genomic reference databases
☆1,159Jun 12, 2026Updated this week
Alternatives and similar repositories for gget
Users that are interested in gget are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to find sequencing data and metadata from public databases.☆600Aug 13, 2024Updated last year
- Examples for gget (https://github.com/pachterlab/gget).☆39Feb 20, 2026Updated 3 months ago
- genes and genomes at your fingertips☆413Mar 5, 2026Updated 3 months ago
- Download FASTQ files from SRA or ENA repositories.☆392May 16, 2026Updated 3 weeks ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆289Jun 16, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Gene cluster comparison figure generator☆642Dec 22, 2025Updated 5 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆391Apr 4, 2026Updated 2 months ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆753Jun 8, 2026Updated last week
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆419Apr 1, 2026Updated 2 months ago
- A grammar of graphics for comparative genomics☆764Feb 23, 2026Updated 3 months ago
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- A list of interesting genome browser and genome visualization programs☆1,086May 27, 2026Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆887Jul 10, 2024Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,078Jun 8, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆858May 2, 2026Updated last month
- Genome browser and variant annotation☆394Jun 5, 2026Updated last week
- machine-readable file format for genomic library sequence and structure☆130Jun 5, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,374Jun 1, 2026Updated 2 weeks ago
- Tool for plotting sequencing data along genomic coordinates.☆340Dec 12, 2025Updated 6 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,570Jun 1, 2026Updated 2 weeks ago
- An efficient CLI to extract sequences from the SRA☆122Jun 8, 2026Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Genomic interval operations on Pandas DataFrames☆191Jun 1, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deep probabilistic analysis of single-cell and spatial omics data☆1,638Jun 8, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,459May 20, 2026Updated 3 weeks ago
- A declarative interactive genomics visualization library for Python.☆244Nov 24, 2025Updated 6 months ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆189Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆101May 29, 2024Updated 2 years ago
- Gene Set Enrichment Analysis in Python☆702Updated this week
- Python library to plot DNA sequence features (e.g. from Genbank files)☆690Jul 2, 2025Updated 11 months ago
- A small database of weird gene annotations☆210May 26, 2026Updated 2 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu …☆104Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- Performant Pythonic GenomicRanges☆495Apr 23, 2026Updated last month
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated last month
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,748Jun 6, 2026Updated last week
- Toolkit for processing sequences in FASTA/Q formats☆1,542Jun 1, 2025Updated last year
- long read RNA-seq quantification☆112Jun 7, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆650May 15, 2026Updated last month