Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.
☆75Apr 15, 2026Updated last month
Alternatives and similar repositories for edgePython
Users that are interested in edgePython are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 7 months ago
- Read RDS files, in Python☆28Updated this week
- GOAT: efficient and robust identification of gene set enrichment☆14Jan 24, 2026Updated 4 months ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Apr 20, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- ☆49Apr 21, 2026Updated last month
- Python introduction for life scientists☆47May 1, 2025Updated last year
- ☆12Aug 30, 2024Updated last year
- This project serves as a comprehensive guide to performing football analysis using Python. You can view Live Demo :☆17Apr 14, 2023Updated 3 years ago
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- ☆12May 13, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆21Jan 21, 2026Updated 4 months ago
- Legend made easy for matplotlib☆36May 6, 2026Updated 2 weeks ago
- Universal Single-Cell Genomics Preprocessing package☆49Feb 21, 2026Updated 3 months ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- A genome browser in your Jupyter notebook☆31Mar 13, 2026Updated 2 months ago
- ☆19Mar 19, 2026Updated 2 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 10 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17Updated this week
- Take command of your set enrichment analyses.☆23Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Automatically annotate cell types, consistently across samples.☆21May 14, 2026Updated last week
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆81May 5, 2026Updated 2 weeks ago
- A performant scientific image visualization system.☆36Mar 20, 2026Updated 2 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆22Feb 4, 2024Updated 2 years ago
- Docker Containers for Bioconductor☆91May 18, 2026Updated last week
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- machine-readable file format for genomic library sequence and structure☆130Apr 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Engaging visualisations, made easy.☆14Aug 7, 2024Updated last year
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- My blog.☆16Aug 8, 2025Updated 9 months ago
- Nascent Transcription Processing Pipeline☆22Apr 30, 2026Updated 3 weeks ago
- Build numpy-style docstrings programmatically and apply them using a decorator.☆16Sep 13, 2024Updated last year