Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.
☆90Jun 17, 2026Updated last month
Alternatives and similar repositories for edgePython
Users that are interested in edgePython are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆29Apr 13, 2026Updated 4 months ago
- Fast genomics quality control tools for sequencing data, written in Rust.☆119Jul 20, 2026Updated 3 weeks ago
- ☆26Updated this week
- A rust implementation of STAR☆70Updated this week
- ☆19Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pareto Task Inference in Python☆23Updated this week
- ☆31May 19, 2026Updated 2 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆45Jul 10, 2026Updated last month
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 10 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 8 months ago
- ☆33Aug 3, 2026Updated last week
- Identifying transcription factor binding sites from neural network contribution scores☆25Nov 8, 2025Updated 9 months ago
- Robust and scalable single-cell signature scoring☆28Jul 28, 2026Updated 2 weeks ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 9 months ago
- AnnData interoperability in R☆194Updated this week
- Multimodal Data (.h5mu) implementation for Python☆129Updated this week
- 🧬 gget enables efficient querying of genomic reference databases☆1,184Updated this week
- Efficient querying of biological databases☆45Oct 27, 2025Updated 9 months ago
- Read and Write RDS files, in Python☆28Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆390Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Universal Single-Cell Genomics Preprocessing package☆51Jul 29, 2026Updated 2 weeks ago
- ☆18May 15, 2026Updated 2 months ago
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- ☆45Oct 30, 2024Updated last year
- Tools for working with BUS files☆102May 27, 2025Updated last year
- ☆32Jun 21, 2026Updated last month
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An efficient CLI to extract sequences from the SRA☆125Jun 12, 2026Updated 2 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆65Feb 1, 2021Updated 5 years ago
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆24Jan 21, 2026Updated 6 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆281Apr 26, 2026Updated 3 months ago