Performant Pythonic GenomicRanges
☆494Apr 23, 2026Updated last month
Alternatives and similar repositories for pyranges0
Users that are interested in pyranges0 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Jul 4, 2025Updated 11 months ago
- Genomic interval operations on Pandas DataFrames☆191Jun 1, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆887Jul 10, 2024Updated last year
- A high-performance BigWig and BigBed library in Rust☆117Updated this week
- Pyranges: a Python framework for ultrafast sequence interval operations☆56May 30, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Rust library and command line tool for working with genomic ranges and their data.☆101May 29, 2024Updated 2 years ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆295Jan 16, 2026Updated 4 months ago
- Jupyter notebook based genomic data visualization toolkit.☆257May 25, 2026Updated 2 weeks ago
- cython + htslib == fast VCF and BCF processing☆443May 14, 2026Updated 3 weeks ago
- Container class to represent genomic locations and support genomic analysis☆27Jun 1, 2026Updated last week
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆893May 22, 2026Updated 2 weeks ago
- A Python package for exploring and analysing genetic variation data☆316Jun 1, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Efficient pythonic random access to fasta subsequences☆486Mar 19, 2026Updated 2 months ago
- Tools to process and analyze deep sequencing data.☆761Jul 23, 2025Updated 10 months ago
- Fast alignment and preprocessing of chromatin profiles☆222Mar 20, 2026Updated 2 months ago
- genes and genomes at your fingertips☆413Mar 5, 2026Updated 3 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆418Apr 1, 2026Updated 2 months ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 6 months ago
- GFF and GTF file manipulation and interconversion☆319Mar 31, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A cool place to store your Hi-C☆240Jun 1, 2026Updated last week
- Fast, flexible and extensible genome browser.☆340May 15, 2026Updated 3 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400May 13, 2026Updated 3 weeks ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆856May 2, 2026Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 10 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆363Dec 9, 2025Updated 6 months ago
- A python extension for quick access to bigWig and bigBed files☆244Jan 14, 2026Updated 4 months ago
- Structural variant toolkit for VCFs☆411May 22, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome browser and variant annotation☆394Jun 1, 2026Updated last week
- Python bindings to UCSC BigWig and BigBed library☆36Apr 6, 2026Updated 2 months ago
- tools for working with genome variation graphs☆1,321Jun 2, 2026Updated last week
- Python library to handle Gene Ontology (GO) terms☆894May 12, 2026Updated 3 weeks ago
- Gene Set Enrichment Analysis in Python☆701Updated this week
- TF MOtif Discovery from Importance SCOres☆180May 13, 2026Updated 3 weeks ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year