Examples for gget (https://github.com/pachterlab/gget).
β40Feb 20, 2026Updated 4 months ago
Alternatives and similar repositories for gget_examples
Users that are interested in gget_examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 𧬠gget enables efficient querying of genomic reference databasesβ1,169Jun 26, 2026Updated last week
- Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformaticsβ10Mar 11, 2022Updated 4 years ago
- β12Aug 30, 2024Updated last year
- Identify cell barcodes from single-cell genomics sequencing experimentsβ43Dec 14, 2021Updated 4 years ago
- β18Mar 14, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β21Nov 27, 2025Updated 7 months ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasksβ14Nov 5, 2024Updated last year
- home of the bear's lairβ10May 19, 2017Updated 9 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"β23Feb 14, 2021Updated 5 years ago
- An R-based interface for loom filesβ68Jul 9, 2020Updated 5 years ago
- Identification of viral RdRPs in single-cell RNA sequencing dataβ14Mar 12, 2026Updated 3 months ago
- R package for computing Association Plotsβ17Nov 4, 2024Updated last year
- β28Dec 19, 2025Updated 6 months ago
- Code used for biomarker discovery using party (building conditional random forests)β15May 18, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Annotated sequence dataβ11Feb 2, 2025Updated last year
- β13Dec 14, 2023Updated 2 years ago
- Seamlessly integrate R packages into Python.β21Apr 12, 2023Updated 3 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primaryβ¦β16Jul 16, 2021Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachterβ19Feb 20, 2018Updated 8 years ago
- β20May 24, 2025Updated last year
- Bioinformatic MCP server that wraps the most useful functions of the gget libraryβ29Oct 27, 2025Updated 8 months ago
- β12Feb 12, 2024Updated 2 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing readsβ46Dec 8, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- β11Dec 17, 2019Updated 6 years ago
- Code repository for the snRNA-seq cross-tissue atlas projectβ21Feb 22, 2022Updated 4 years ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.β17Jun 3, 2026Updated last month
- Interpretable, protein structure-based prediction of missense variant deleteriousness.β23Aug 6, 2025Updated 10 months ago
- RNAseq pipeline based on snakemakeβ27Mar 8, 2023Updated 3 years ago
- β25May 23, 2026Updated last month
- Some sleuth walkthroughs to help you get startedβ10Jul 26, 2018Updated 7 years ago
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count β¦β85Jun 17, 2026Updated 2 weeks ago
- R vignettes for processing BUS format single-cell RNA-seq filesβ21Feb 8, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipelineβ36Mar 19, 2025Updated last year
- β45Oct 30, 2024Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlasβ26Jan 14, 2024Updated 2 years ago
- Using BCR and expression for sequence embeddingβ27Jun 12, 2026Updated 3 weeks ago
- a flexible tool for microsatellite investigation and visualizationβ10Jun 15, 2026Updated 2 weeks ago
- β18Feb 5, 2018Updated 8 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysisβ35Dec 17, 2021Updated 4 years ago