schatzlab / appliedgenomics2017
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
☆56Updated 6 years ago
Related projects: ⓘ
- ☆78Updated 10 years ago
- ☆82Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated last year
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆68Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated 8 months ago
- An awk-like VCF parser☆54Updated 8 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆47Updated 5 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆88Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Analysis from kallisto paper☆32Updated 8 years ago
- PHAST☆67Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Genome inference from a population reference graph☆92Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 3 months ago
- Maximum likelihood demultiplexing☆46Updated last year
- Read visualizer for structural variants☆80Updated 6 years ago
- ☆58Updated this week
- ☆95Updated last year
- Automatically optimise three of Velvet's assembly parameters.☆46Updated last year
- ☆49Updated last year
- Tools for analyzing 10X Genomics data☆42Updated 5 years ago
- Battenberg algorithm and associated implementation script☆51Updated 3 years ago
- Edinburgh Genomics MinION training 2016☆34Updated 7 years ago
- UCSC Nanopore☆42Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago