schatzlab / appliedgenomics2017
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
☆57Updated 7 years ago
Alternatives and similar repositories for appliedgenomics2017:
Users that are interested in appliedgenomics2017 are comparing it to the libraries listed below
- ☆78Updated 11 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- ☆93Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 3 years ago
- ☆82Updated 3 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Structural Variant Index☆72Updated 3 months ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Maximum likelihood demultiplexing☆46Updated last month
- ☆49Updated 2 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆54Updated 9 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆93Updated last year